| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1941 |
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| Symbol | |
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| ID | 4252515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2315332 |
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| End bp | 2316825 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638118552 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_734072 |
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| Protein GI | 113970279 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.211357 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0401761 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTTAATC GCCTAACTCT ATCCGACTCT CAATCAACGG CGGCTCAGCC TTGGATACAG
CCCATTTCGT TTGTTTTTCG TTTGCGCGTA AAGCCGCTTT ATCTAGGGCT AGTGACGGCA
TTCAGTGTTG CGGGTTGCGC CATGGGGCCA GATTACCAGC GACCCGAGCT GGCATTACCG
AGTCAGTATC AAGCGCAAAT CTTGTCGCAA ACAACTGCCG AGCAGGGGAA TATAAAGGAC
GTCTCGGCCC TCTCTTGGCG GCATTTTTAC CAAGATCCTG TACTGATTTC CTTGATTGAA
CATGCGCTGG CGAACAATTT GGATCTGCAA ATGGCGCAGT CGCGCCTGCT CGCCGCCCGT
TCAAAAATGA CTGTGGTCGA CAGTGCGCTT TGGCCAGAAG TCTCGGCAAA TTTAGGCTAT
GAGCGCAGTC TCGATAGCGG TGCAACCAGT AAGGATCCCA GCCCGACTAC CGCAGTGGAT
CTGGCGGGCA CTGTGTCGTG GGAGCTCGAT CTATGGGGTG CCAACCGCAG GGCGAGTGAG
GCCGCAAAAG CTGATTATCT CTCTGAGGTT GAAAAACTGA GGCTCACCTA TGTCAGCCTT
ATCAGTGACA TTGCTAGCCG TTATTATGAA TGGCTCGATA TCGAGCAGCG TTATAGTGTG
TCTATCGATA CCGTAGGCAT ACGGCAGAAG GAACTGGATA TTGCCAAGCT TCGCCATGCC
AATGGTGTGA TTTCGGGTCT TGATGTGCGT CAGGCTGAAG TTGAGCTGCA GAGTACAAAA
GTGACCTTGC CGACATTAGA CTATGAAAGA AAATACAAAA TAAATCAGCT GCATATCTTA
CTCGGAGAAT ACGATTACGC CTTTCCATCT CCTCAAGGTT TACCCGAGAA TGTTGGTTTA
CCCTATGAGC TGAGCGCAGG CGTGCCCTCT GAATTATTGA CATTAAGGCC CGATGTCAAA
ATGTCAGAAC AAGCAATGAT AGCCGCCAAT GCGCAGGTTG GGATTGCCAA GGCTGCGTTC
TTTCCTAAGT TCACCATTTC GGGCCAATAT GGCCGGGAAA ATAATCACCT TAAGGATATT
TTTGATAGCA ATGGTGTGAC TTGGTCGCTC CTTGGCGGCA TTAGCGCGCC GATTTTTAAT
CGCGGCAAGA TTGCCGCCGA ATACGATATC GCCACCGAAG AGGCGAAACA GTCGATGCTA
AGTTATCGCA ATGTGGTGTT GACCGCTTAT TTTGATGTGA ACGATGCGCT GAATAATCTA
AAACGTGCCC AAGAGGCCAT CAAAGCGCAA AGGGAATTAG TCCAATCTTC ATCGGCTTAT
GCGCGTCTTG CACGGCTACG TTACCAAAAT GGTGTCGCTA CTTCGCTGGA TTTAATGGAT
GCGCAGCGGC AATTATTTAG CGCTCAACTA GCCTACAGCG AGATCTTAAG GGATAAGCAA
TTGGCCAAAA TTGCCCTGTA TCGCGCCCTC GGTGGTGGCC CAGTTAACGA ATAA
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| Protein sequence | MVNRLTLSDS QSTAAQPWIQ PISFVFRLRV KPLYLGLVTA FSVAGCAMGP DYQRPELALP
SQYQAQILSQ TTAEQGNIKD VSALSWRHFY QDPVLISLIE HALANNLDLQ MAQSRLLAAR
SKMTVVDSAL WPEVSANLGY ERSLDSGATS KDPSPTTAVD LAGTVSWELD LWGANRRASE
AAKADYLSEV EKLRLTYVSL ISDIASRYYE WLDIEQRYSV SIDTVGIRQK ELDIAKLRHA
NGVISGLDVR QAEVELQSTK VTLPTLDYER KYKINQLHIL LGEYDYAFPS PQGLPENVGL
PYELSAGVPS ELLTLRPDVK MSEQAMIAAN AQVGIAKAAF FPKFTISGQY GRENNHLKDI
FDSNGVTWSL LGGISAPIFN RGKIAAEYDI ATEEAKQSML SYRNVVLTAY FDVNDALNNL
KRAQEAIKAQ RELVQSSSAY ARLARLRYQN GVATSLDLMD AQRQLFSAQL AYSEILRDKQ
LAKIALYRAL GGGPVNE
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