Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1929 |
Symbol | |
ID | 4252503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2299261 |
End bp | 2300058 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638118540 |
Product | short chain dehydrogenase |
Protein accession | YP_734060 |
Protein GI | 113970267 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000156385 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000437203 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
| |
Sequence |
Gene sequence | ATGCTGAATA CTACGATGTT TAATTATCAA GGTAAGAATG TTGTCGTTGT CGGTGGTACG AGTGGAATTA ACCTCGCGAT TGCCAACGCC TTTGCGCTGG CTGGCGCGAA TGTGGCGGTG GCGAGTCGCA GCCAAGACAA GATTGATGCC GCCGTGTTGC AGCTAAAGCA GTCAAATCCT GATGGGATCC ACCTTGGGGT GAGTTTTGAT GTCAGGGATT TGGCTGCGGT CGAGCAGGGG TTTGACACTA TCGCCTCCGA ATTTGGCTTT ATCGATGTGT TGGTAAGTGG CGCTGCAGGT AACTTTCCGG CTACAGCGGC AAAACTCTCT GCTAATGGCT TTAAAGCCGT GATGGACATT GATCTGCTGG GCAGTTTTCA AGTGCTAAAG ACGGCTTATC CTTTACTGCG TCGCCCCCAA GGGAATATTA TTCAAATCTC GGCGCCGCAG GCATCGATAG CCATGCCAAT GCAAGCTCAT GTGTGCGCTG CTAAAGCTGG TGTAGACATG CTCACTCGGA CATTGGCGAT AGAATGGGGC TGTGAAGGGA TTCGAATTAA CTCGATTGTG CCTGGTCCTA TTGCGGGCAC AGAAGGCTTT AACCGCTTAG CGCCGAGTGC AGCTCTGCAA CAAGGAGTGG CACAATCAGT ACCGTTAAAA CGCAATGGTG AAGGGCAGGA CATTGCTAAT GCCGCGATGT TTTTAGGCTC TGAGTTGGCC TCCTACATCA CAGGGGTTGT GCTTCCTGTC GATGGCGGAT GGTCGCTCGG TGGCGCCAGC ATTGCGATGT CGGATTAA
|
Protein sequence | MLNTTMFNYQ GKNVVVVGGT SGINLAIANA FALAGANVAV ASRSQDKIDA AVLQLKQSNP DGIHLGVSFD VRDLAAVEQG FDTIASEFGF IDVLVSGAAG NFPATAAKLS ANGFKAVMDI DLLGSFQVLK TAYPLLRRPQ GNIIQISAPQ ASIAMPMQAH VCAAKAGVDM LTRTLAIEWG CEGIRINSIV PGPIAGTEGF NRLAPSAALQ QGVAQSVPLK RNGEGQDIAN AAMFLGSELA SYITGVVLPV DGGWSLGGAS IAMSD
|
| |