| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1881 |
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| Symbol | |
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| ID | 4252455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2239597 |
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| End bp | 2241759 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638118492 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_734012 |
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| Protein GI | 113970219 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAGTT TAGAATCGTC CTCAGAATCG ATTGCCGTTA ATGCCCAAGG GCAAACGAGC
CGCCGTGCGG CGCGCGCCCA GGCGCAAGCC TTTATCGATA CCCTTAAACC ATTACAACAC
CCTAATTCGC AAAAGTTATA TTTGCAGGGA AGCCGTGAGG ATCTCCGTGT AGGGATGCGG
CAAATTCTGC AAACCGATAC ACGGATTGGC GGCACTGCGA CCGCGCCCAT AGTCGAGAAA
AACCCTCCCA TTCCTGTGTA TGACTGCGCC GGTCCTTATT CCGATCCGGC TGCGCAAATT
AACGTGCGCC AAGGCTTAGC CAAACTCAGA TTACCTTGGA TTATCGAGCG CCAAGATACC
GAAGTGCTTG ATTGTGCAAC CTCAGATTTT ACCCAGCAAC GCCTCAAGGA TGATGGGCTC
GATCATCTGC GTTTCGAAGC CGGCTCAAGT GCGATTGTTC GTCCTCGCCG TGCCTTACCG
GGTAAACGCG TGAGCCAATT ACACTATGCC CGCCAAGGGA TTATTACCCC TGAAATGGAA
TATGTTGCGA TTCGAGAAAA TATGGCGCTC GCCGAGGTGC AAGATGAAAT CTTAAACCGC
CGTGGCCAAG GTGAATCCTT CGGCGCTGTG ATTGGTAAAC CGATTACCCC AGAGTTTGTC
CGCGATGAAA TTGCCCGTGG CCGCGCGATT ATTCCGTTAA ATATCAATCA TCCAGAAGCC
GAGCCTATGA TTATTGGTCG TAACTTCTTA GTGAAAGTGA ATGCCAATAT CGGTAACTCG
GCGGTCACGT CCTCCATCGA GGAGGAAGTC GAAAAGCTAG TCTGGTCAAC CCGTTGGGGC
GCAGACACTG TGATGGACTT GTCCACTGGG CGCTATATCC ATGAAACCCG CGAATGGATC
ATCCGCAACT CGCCAGTGCC TATTGGCACA GTGCCGATTT ATCAAGCACT TGAAAAAGTG
AATGGGGTTG CAGAACACCT GACCTGGGAA GTATTTCGCG ATACCTTGAT TGAGCAAGCG
GAGCAGGGCG TCGATTACTT CACCATCCAC GCGGGCGTGT TATTGCGCTA TGTACCCATG
ACCGCCAAAC GGGTGACTGG AATTGTGTCC CGCGGCGGCT CGATTATGGC TAAATGGTGC
TTGAGCCACC ATCAAGAAAA CTTCCTCTAT ACCCATTTTC GTGAGATTTG CGAGCTGTGC
GTGGCCTACG ATGTGTCGCT GTCATTAGGC GATGGTATGC GTCCAGGCTC GATTGCCGAT
GCCAATGATG AGGCGCAGTT TGCCGAGCTT GAGACCTTAG GCGAGTTGGT CAAAATCGCT
TGGGAATACG ATGTGCAGAC CATTATCGAA GGGCCTGGAC ATATCCCGAT GCAACTTATC
AAAGAGAATA TGGATAAGCA GCTTATTCAC TGTGCCGAGG CGCCGTTTTA TACTCTAGGT
CCACAAATTA CTGATATTGC GCCGGGTTAC GATCACTTCA CCTCTGGGAT AGGTGCGGCG
ATGATCGCAT GGTATGGCTG CGCCATGCTC TGCTATGTGA CGCCGAAAGA ACACTTAGGT
TTGCCCAATA AGCAGGACGT CAAACAAGGG CTGATTGCCT ACAAGATTGC CGCCCATGCC
GCCGATATTG CTAAGGGCCA CCCAGGCGCG CAGATCCGCG ACAATGCATT ATCCAAGGCG
CGTTTTGAAT TCCGTTGGGA AGACCAATAT AACCTGGGAC TCGACCCTGA TACCGCCCGA
GCCTATCACG ATGAATCTCT GCCACAGGAG TCGGCCAAGG TTGCGCACTT TTGCTCTATG
TGTGGCCCAA AGTTCTGCTC GATGAAGATC ACCCAAGATG TGCGCGACTA TGCGGCAAGT
TTAGCGGCGG GTACGTTGTC AGTGGCTTCG TCAAGCCAAA ATGTTGAGAG CGCTGAAGCG
CTTGCATCGA TAAACCCTGC TCAACAAGGG CAATCAAACA CTGAGGCACT CCAGCAAATC
AGAGTCAAAA CCCAAGATGA ATTAGCGGCG GCCATGGCGC AAAAATCGGC CGAGTTTGCG
GCTTCCGGCG CCAAACTGTA TCTGCCGCTG GGCGATGCTA ATACAGCAAA TACAGCCAAC
GAATCGGCCA AGCAGCAGGA TGGGACAGAG CTCAGACCGA CAGCACAGGT TGCGGAGGTT
TGA
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| Protein sequence | MSSLESSSES IAVNAQGQTS RRAARAQAQA FIDTLKPLQH PNSQKLYLQG SREDLRVGMR
QILQTDTRIG GTATAPIVEK NPPIPVYDCA GPYSDPAAQI NVRQGLAKLR LPWIIERQDT
EVLDCATSDF TQQRLKDDGL DHLRFEAGSS AIVRPRRALP GKRVSQLHYA RQGIITPEME
YVAIRENMAL AEVQDEILNR RGQGESFGAV IGKPITPEFV RDEIARGRAI IPLNINHPEA
EPMIIGRNFL VKVNANIGNS AVTSSIEEEV EKLVWSTRWG ADTVMDLSTG RYIHETREWI
IRNSPVPIGT VPIYQALEKV NGVAEHLTWE VFRDTLIEQA EQGVDYFTIH AGVLLRYVPM
TAKRVTGIVS RGGSIMAKWC LSHHQENFLY THFREICELC VAYDVSLSLG DGMRPGSIAD
ANDEAQFAEL ETLGELVKIA WEYDVQTIIE GPGHIPMQLI KENMDKQLIH CAEAPFYTLG
PQITDIAPGY DHFTSGIGAA MIAWYGCAML CYVTPKEHLG LPNKQDVKQG LIAYKIAAHA
ADIAKGHPGA QIRDNALSKA RFEFRWEDQY NLGLDPDTAR AYHDESLPQE SAKVAHFCSM
CGPKFCSMKI TQDVRDYAAS LAAGTLSVAS SSQNVESAEA LASINPAQQG QSNTEALQQI
RVKTQDELAA AMAQKSAEFA ASGAKLYLPL GDANTANTAN ESAKQQDGTE LRPTAQVAEV
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