| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1685 |
|---|
| Symbol | |
|---|
| ID | 4252261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1997345 |
|---|
| End bp | 1999339 |
|---|
| Gene Length | 1995 bp |
|---|
| Protein Length | 664 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638118297 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_733818 |
|---|
| Protein GI | 113970025 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0832618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.158688 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATGGC AATGGATTGG CAACCTCAGC TTGAAACAAA AATTACTCAT GGTTGTATTG
CCGCCCTTAT TTGCATGTTT TTTATATGGT GCTTTGTTTC TCATTGAAAA ATATGAGTAT
CGTCAAGAGC TTAAGCTTAT CGTCCAATTG AGTGAATTGG CGGTCACCAA CAGTAATCTG
GTGCATGAGC TACAAAAAGA GCGTGGCATG AGCGCAGGCT TTATTGGCTC AGCGGGTAAA
GCCTTTGCAG GCAAAATCCC AAGTCAAAGA CAACTGACGG ATAGCCAGTT AAAACAATTC
CAAGATTTCA TTTCAAACAA TGCGTTACCC GAAGTGTTTG CGCCTAAATT ACGGGAGATC
AACACTCAGC TTGGTCGCCT TTCTGGGATC CGTTCGCAAA TCGACAGTTT ATCCATCAGT
GTGGCCGATG AAGTGGCCTA TTACACCGAT CTCAATAAAC AGTTATTGGC CATCGTCGAT
GAAACGGCAA AGGCTGGCGC CAACCAAGAA ATTGCCATTA AGGCCGCGGC ATTCAGTGCC
TATCTGCAAA TGAAGGAACG GGCGGGGATT GAGCGTGCGG TCTTAAGTTC AACCTTCGGC
CAAGCAGGTT TCAAACCTAA GGTATATGCC AAGTTTATAA CCTTAGTCTC TGAGCAAAAT
ACTTATCTGG AGCGCTTCTT GGCACTTGCC ACGCCCAATC TCGTCGAGGG TATTCGTCAG
CTGCAAAATG GTAACGAAGT CAGTGAAGTT GAGGCGCTGA GACAAATAGC AATCGACCAA
GATAATCAAA AAATTCAGCA ACAAAACCCG GAGGATTGGT TTGCGAAATC CACGGCACGT
ATCGACCGTT TACGGGATTT TGAGCAAGAG GTTTCTACCG ATCTGGTTAA GACCACCACA
GACCGACTCT ATACCGCCAA CGAGCATATG TTCTTCGTGC TCGTGACATT AACCGTGGTG
TTAGTGTTAG TGCTGCTGTT GAGTTTATCG GTTATCCGTT ACCTACACGA CAGTGTGCAC
CATGTGTATT CGACGGTGAC AAAGGCCAGG AAACATTATG ATCTCAGTGT GCGTTTAACC
CAAAATAGCT CGGATGAATT TGGGGAGTTA GCCATTGCAT TCAACGACAT GATGAATGAT
TTCGAGAGTG TGATCCTGCA AGTGCGTGCC AGTGCCAGCA AGTTACAACA AGCGGTAGAG
CAAATGGATG TGTGTACCCA CGCAATGGAG CAAGATGTGA TGGCAGGGCA CAGTGAGGCC
GAACAAGTGG CCTCGGCAAT GACGGAGATG AGTGCGACGG TGGCAGAAAT CGCCAGTAAC
GCCGTTAATG CATCGGAAGC CTCCACCGCG GCGAATCATG AGGCAAAAGC GGGTAATATC
GAAGTGGGTC GTACCAGTGC CGCCATTAAG GCTTTAGCCG ATGATATTGA TGGCGCCTCT
AAGGCCATTA ATGAACTCGA CCGTGAAATC CACGGTATTG TGGTGGTACT CGATGTGATA
AGCGGCATTG CCGAACAAAC GAATCTACTT GCACTTAATG CGGCGATTGA AGCGGCAAGG
GCAGGCGAGA TGGGACGGGG CTTTGCCGTC GTGGCCGATG AAGTGAGAAG TCTTGCGCAG
CGCTCACAAA CCTCGACCTC CGATATTAAG AACATGACGG ATAGACTGAA ATCGGGCGCC
AGCATTGCCG TTAAAGCCAT GGAACGCGGA CTCGCACAGG CCAATAACAG CGTGCACGAA
GCCGAGCAGG CGGGGATTGA GCTTAAACGT ATCGTCGAGC AAGTGGATAT TATCGACCGC
ATGAATGAGC AAATTGCCAC GGCAACCCAT GAACAGTCTG CCGTGTCTGA GGATGTGAAT
CGCAATGCAT TGAAGATCAG TGAAATTTAT CTCAATACCC AGAGGATTTC GGATGAATTA
CGGGAATTGA CCAAGGCACT GACCTACGAT GCGGCGCTAA TGTCCAAGGA AGTGAACAAG
TTCAACGTCA ATTAA
|
|---|
| Protein sequence | MKWQWIGNLS LKQKLLMVVL PPLFACFLYG ALFLIEKYEY RQELKLIVQL SELAVTNSNL
VHELQKERGM SAGFIGSAGK AFAGKIPSQR QLTDSQLKQF QDFISNNALP EVFAPKLREI
NTQLGRLSGI RSQIDSLSIS VADEVAYYTD LNKQLLAIVD ETAKAGANQE IAIKAAAFSA
YLQMKERAGI ERAVLSSTFG QAGFKPKVYA KFITLVSEQN TYLERFLALA TPNLVEGIRQ
LQNGNEVSEV EALRQIAIDQ DNQKIQQQNP EDWFAKSTAR IDRLRDFEQE VSTDLVKTTT
DRLYTANEHM FFVLVTLTVV LVLVLLLSLS VIRYLHDSVH HVYSTVTKAR KHYDLSVRLT
QNSSDEFGEL AIAFNDMMND FESVILQVRA SASKLQQAVE QMDVCTHAME QDVMAGHSEA
EQVASAMTEM SATVAEIASN AVNASEASTA ANHEAKAGNI EVGRTSAAIK ALADDIDGAS
KAINELDREI HGIVVVLDVI SGIAEQTNLL ALNAAIEAAR AGEMGRGFAV VADEVRSLAQ
RSQTSTSDIK NMTDRLKSGA SIAVKAMERG LAQANNSVHE AEQAGIELKR IVEQVDIIDR
MNEQIATATH EQSAVSEDVN RNALKISEIY LNTQRISDEL RELTKALTYD AALMSKEVNK
FNVN
|
|---|
| |