| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1583 |
|---|
| Symbol | |
|---|
| ID | 4252160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1867810 |
|---|
| End bp | 1871484 |
|---|
| Gene Length | 3675 bp |
|---|
| Protein Length | 1224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638118196 |
|---|
| Product | Ig domain-containing protein |
|---|
| Protein accession | YP_733717 |
|---|
| Protein GI | 113969924 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.61768 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0651551 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAG CGTATAAGGT TTTTCTCGCA GGAATATGTT CACTTTTCTT GGTCGCATGC
GGTGGCGGAG GCAGTATCTC CGACGATGGC ACAGGAACGA CACCACCCAG TGTAGTGACT
GTCACTCTTA GTATTTCGAA TAGTGACAAT GTTTCACTGG CTACTCCTGC GGAGGTGCAA
GCAACCGTTG TGGATTCTAA AACAGGACCT AAGGCTGGTA TTGTCGTTAC ATTTAAGCTC
GACAATGACG AATTGGGCAC TTTTACTCCT TCAACTGGAA CTCAGTTAAC TGATTCATCT
GGGGTTGCGA AGATTAAGCT TGATACGGGG AGTTTAGCGG GTGCAGGAAG TGTGACTGCT
AGTATTGGAA CTGGTGAGTC CGCTAGCATG GGATTCTATT CAAAAGGCGA TGGTGCCATT
AATCCAGGAA CGGGGAATAA ATTAAAGCTA TCCCTTGTGA ATGCTCAAGA GCAAGCCATA
ACAAGTATTA GTTCCGCAAC TCCTGGAATT GTTAAAGCAC TGTATACTAA TAGTTCTGAT
GAGCCTCTCG TTGGTAAGGT TATTACCTTT ACTTCAACGT TAGGTAAATT TCAGCCTGAA
TCAGGTACTG CTCTGACTGA TGCACAGGGT CTTGCTAAAA TAGCTATAAC AGCAGGAACT
GTTGCAGGTG CTGGTAAAAT TATTGCGAAA GTTGATGATA CAGAGTCAGA AGCACTTGGA
TTTAATACCT TAGGCGATGA AGTTGTAGTT AAACCAATTG ATGCCTATAG CATTGCGTTA
ACTATTACAG ATTCACAAGG TCAAGAAATA CGGAATATTA GTCATAGTGT TCCAGGTTCA
GTCATTGCAA CTCTGCAAAA AGATGGGGTT CCAACTAGTT ACCAAACGAT TTCATTCAAT
TTAACAGGCC AGGGTACATT AAATCCTTCA TCTGGAACTG CATTAACTGA CTTGAATGGT
CATGCATCAG TAACCTTAGT CACTGGTACT AATGCTGGGG CAGGTACTGT CACCGCAAGT
TTTTCGCTTG AAAACGAAAC AATCACCGAT AGCTTTAACT TTGAAGTTGC AGGTGATGCT
CCTGGTGGTA ATGGTGAGGC AAATTCTTTG TCTATTCAGC TTTCAAATAG TCAGACTGGA
ATGCCAACAA CAAATATTAG TGCTACGCAA CCAGGGAAAG TGACTGTTGC TTTAGTGGAT
AAGGATTCAA CTCCTTTGGT AGGTAAAGTT GTTAGTTTTA GTAGTACGTT AGGTAACTTT
CTACCCACTC AAGGAACCGC GTTAACTGAT GCTCTTGGTC GCGCATCTAT TACGTTAACA
GCGGGAAGTA TTGAAGGTGC TGGTGAAATT ACTGCCACTT ATGGAACAGC TAAAGCGATT
ATTGGATTTG TAACCGCAGG AGATGAAATT GACCCTGTTG AAGCAAGCCC TGAAATTAGC
TTTGATATCT ATGACTGTAA TGGTGTTGCA GCTTGGGATA AAGCGTTAAA GAATTTCGAA
GTTTGTAAAA CTACAGACAA TATTACTAAT GATAAACCCG GCATTATCGG TGCTAAAGTG
ACTCGTTCCG GCAGCACACA AGCTTTGCAA CAAGTGTTGA TTTCTGCTGC GACTACTATA
GGGGCAATTA GCCCAAGCTC AGGTACTGCT ATAACAAATG CTGAAGGTAA AGCAATTCTC
GATTTGTATG CGAATGGTAA TGTTGGTGCA GGAGAGATTT CACTGAAAGT GAAAGATGTC
ACTGCAACCA AAGCTTTTGA AATTGGCAGG GTTAATATTT CACTGAAACT AGAAACTTCT
CTTGGCGGTA ATTTACTTCC TGCTGGTGGT TCTACCATTT TGGATGTAAC AGTTTTAAAT
CCAGACGGTT CATTAGCAAC AGGCCAACCT TTTACTCTTG TATTTACCTC TGAATGCCAA
GCATCCAATA AAGCAATTAT TGACTCACCT GTTATTACAA ATGGTGGGAA GGGATACGCT
ACTTATAGAA GCACTGGTTG CGAAACTCAG GATACAGTAT CCGTTTCTGC TATAACTGGC
GGAGGAAGTG TAAGTTCAAC TGCAGTTATC AATATTGATT CTATTAAGGT TGGAGCTTTG
CAATATGTAA CGGCTAACCC GACATTGTTG GCATTACAAG GAACTGGAGG GATCGCAGGT
GCAGGTGCTC GTTCTGAAAC ATCTGTAGTA ACATTCAAAC TATTAGATGA AACGGCAGCT
CCAGCGGGGC AAGAAAGAGT TTGCTTTGAA TTAAGCACCG AAGTCGGAGG GATTAGTCTA
AGCCCTGCTC CATTAGCACA AGATTATGTC GATTGCCCTA ATTTTCCAAA ACCAAATTCT
CCTAACTATC CTGCTGATTT AAGTGTGCCT AATAAGTATG CTGTAGCCGT CACGGACAGT
GCGGGACTAG CATCTGTTAT TGTAAGAAGT GGTAATAGAG CAACTCCTGT AAAAGTGTTT
GCCTTATGGG CAGGTAGTAC TGCGGATGGC CATAATGGTG TTATTTCAAA TGTGTCAGAT
CAACTTGCAA TCACTACAGG CCTTGCTGAT GATGACAGTT TTTCTGTTTC AGCATCCATA
TTTAATCCAG AGGGTTGGGA TTACGATAAT GAAACAGTAG ATATAAATAT ATTGGCGGCA
GATCATTTCA ATAATATGGT TCCCGCTGGC ACTGTAATTG TTTTCACTGC AGAAGGGGGG
GCAATTCCTG GCTCTTGTAC AACCGGAGGT TTAACTAATC CTGATGGGGC TTGTAGTGTA
CAGTGGCGTA GCCAGAGTCC GCGACCATTT TTGAGTACAA CAGTACAATG TCCTGTACCA
TTTTATGGAG ATATTAATCC CCCTTGTATG GGGTCATCAA AGAGTCTCTT TGATTCAGGA
GTCAATTCAA TATTGACTGA ACCTAGACCA GGGAGAGCGA CTATCACTGC TTATGCTATT
GGCGAAGAAA GTTTTGTGGA TTTAAATGGT AATGGTTTAT TTGATACTAA TGAACCATTT
ACTGATAGAT CCGAAGCTTT TACAGATCAT AACGAGGATG GTTTTTATCG TAAAATATCA
CAAAGTTCCT CATTAGCTGA TTTACTTATT CAACCTGCAG GATCGGTGAA TGAGGAGTTT
ATTGATTACA ACTTTGATGG AGTCTTTAAT AAAGCTGACA ATAAATATAC AGGACTATTA
TGTGCTTCTG GTTCGAGTGC TGCTTGTACT GACACTGGTT TGGATGATAA TCGAGCTCAA
CTAAATATCT TCAGAAATAT TCCAATTGTT ATGTCTGGTA GTACGCCAAT GGTTCGATTA
GTAAAGATCG ATTCAGCTGA TAAAGACACT ATGACAGCAG TAACAGAAAT AGATTTGATT
GATAGAACAG ATCCTCTAAA TCCGATAGAA AAAGAGCCGC AAACAGTTTA TCTGTTTGTT
TCTGATGTAA ATAATAATAC ATTACCCTAC GAAACTAAAG TAACGACTTC AATAGACAAT
GGAAAGCTTA TAGTCCCAGT GGGAGGGAGT TATACAATTG CGAGTAATGC ATCTAACAAA
CCGTTAATAT ATGCATTTAC TATCGGCCAA GAAGACCAAC CTAACCAAAA GCTCTCTGGT
GCACTTGTCA TAACCGTAAA AACACCGAAA GGTTCGCCTG TGAGCGTGAC TGTGAATGTT
AAAGATGGCG GTTAA
|
|---|
| Protein sequence | MKSAYKVFLA GICSLFLVAC GGGGSISDDG TGTTPPSVVT VTLSISNSDN VSLATPAEVQ
ATVVDSKTGP KAGIVVTFKL DNDELGTFTP STGTQLTDSS GVAKIKLDTG SLAGAGSVTA
SIGTGESASM GFYSKGDGAI NPGTGNKLKL SLVNAQEQAI TSISSATPGI VKALYTNSSD
EPLVGKVITF TSTLGKFQPE SGTALTDAQG LAKIAITAGT VAGAGKIIAK VDDTESEALG
FNTLGDEVVV KPIDAYSIAL TITDSQGQEI RNISHSVPGS VIATLQKDGV PTSYQTISFN
LTGQGTLNPS SGTALTDLNG HASVTLVTGT NAGAGTVTAS FSLENETITD SFNFEVAGDA
PGGNGEANSL SIQLSNSQTG MPTTNISATQ PGKVTVALVD KDSTPLVGKV VSFSSTLGNF
LPTQGTALTD ALGRASITLT AGSIEGAGEI TATYGTAKAI IGFVTAGDEI DPVEASPEIS
FDIYDCNGVA AWDKALKNFE VCKTTDNITN DKPGIIGAKV TRSGSTQALQ QVLISAATTI
GAISPSSGTA ITNAEGKAIL DLYANGNVGA GEISLKVKDV TATKAFEIGR VNISLKLETS
LGGNLLPAGG STILDVTVLN PDGSLATGQP FTLVFTSECQ ASNKAIIDSP VITNGGKGYA
TYRSTGCETQ DTVSVSAITG GGSVSSTAVI NIDSIKVGAL QYVTANPTLL ALQGTGGIAG
AGARSETSVV TFKLLDETAA PAGQERVCFE LSTEVGGISL SPAPLAQDYV DCPNFPKPNS
PNYPADLSVP NKYAVAVTDS AGLASVIVRS GNRATPVKVF ALWAGSTADG HNGVISNVSD
QLAITTGLAD DDSFSVSASI FNPEGWDYDN ETVDINILAA DHFNNMVPAG TVIVFTAEGG
AIPGSCTTGG LTNPDGACSV QWRSQSPRPF LSTTVQCPVP FYGDINPPCM GSSKSLFDSG
VNSILTEPRP GRATITAYAI GEESFVDLNG NGLFDTNEPF TDRSEAFTDH NEDGFYRKIS
QSSSLADLLI QPAGSVNEEF IDYNFDGVFN KADNKYTGLL CASGSSAACT DTGLDDNRAQ
LNIFRNIPIV MSGSTPMVRL VKIDSADKDT MTAVTEIDLI DRTDPLNPIE KEPQTVYLFV
SDVNNNTLPY ETKVTTSIDN GKLIVPVGGS YTIASNASNK PLIYAFTIGQ EDQPNQKLSG
ALVITVKTPK GSPVSVTVNV KDGG
|
|---|
| |