Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1524 |
Symbol | cpdB |
ID | 4252102 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1797653 |
End bp | 1799710 |
Gene Length | 2058 bp |
Protein Length | 685 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638118128 |
Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
Protein accession | YP_733659 |
Protein GI | 113969866 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAAATA AAAAACTACT CGCAGTGATG ATCACTGCCG CCTTAGGCGT AAGCGCCTGT GGCTCGGATG ATGAGCAAAT CGTTCAAGCG GATTTACGTG TATTAGAAAC CACGGATCTG CACACAAATA TCATGGATTT CAACTACTAC AGTGGTAAAG AAGACCCAAC TATCGGTCTG GCACGTACAG CAAGCCTAAT CCATGCCGCC CGTAAAGAAG CCAAAAACAG TGTACTCGTA GATAACGGCG ACCTGCTTCA AGGTAGTCCT ATGGGAGACT ACATGGCTAA AGTCGGCCTA CAAATGGGCG ATGTTCACCC AGCCTATAAA GCGATGAATC TATTAGATTA CGAAGTAGGT AATATCGGTA ACCACGAATT TAACTATGGT TTAGATTTTT TAAATAAATC ACTTCATGGT GCAGAATTCC CTTATATTAA CGCCAACGTC TATTGTGCCG ACGATAATGG CTGCTGGAAT GATGTGAAAA AAGGTGAGCA TTTATTCACC CCTTATATCA TTAAAGAAAA GCAAATCGTC GATAGCGAAG GAAATAACCA AACCATTAAG ATTGGTTATA TTGGTTTTGT GCCACCACAA ATTTTATTGT GGGATAAACA AAATCTGACA GGCAAAGTTA CGGTTGAAGA TATTGTGGCG ACCGCTAAGA AATATGTGCC TGAAATGAAA GCTAAAGGCG CTGATCTGAT TATCGCAATC CCACACTCAG GTATTGGTTC GACCGAAAAT CCTGGCGATC CTATGGCAGA GAACGCAACC TATGCCTTGA CCTATGTCGA CGGTATTAAT GCCATCCTCT TTGGTCACAG CCACTCTATT TTCCCCGATG CCAAATATGC CGACTTACCT AACACAGACG TGACTAAAGG TCTGTTAAAT GGTGTACCAG CCGTCATGCC TGGACGCTGG GGTGACAACT TAGGTGTGGT CGACTTTAAA CTCGAACGTA AAGACGGTAA GTGGTCTGTG CTCAGTGCCA CCACTAAGGC ACGTCCTATC TATGATGGCG CAACCAAAAC ACCATTAGTC GAAGCCGACG CCGCCATCCA TGATGCTGTC GCCGCCGAGC ACCAAGGGAC CCTCGCCTTC GTGGACGAAC CGATTGGGGT TGCTGCCGCC GACATGTATA GCTTCTTGAC CTTAGTGCAG GACGATCCAA CCGTTCAAAT CGTTTCTGAC GCGCAAATTG CCAACGTTAA AGCCAAACTC CCCGAGGCAT TAAAAGATCT ACCAGTTTTA TCGGCCTCTG CGCCATTCAA AGCCGGTGGT CGCCACGGAA CAACCAGCGA TGCAGACCAA TATGTACAAG TCGATAAAGG CGCATTGACC TTTAAAAACG CCGCCGATCT TTACCTCTAC CCCAACACTA TGGTGGCGGT TAAAGCGACG GGGGCTGAAC TGAAAGATTG GCTGGAGTGC TCGGCTAACC AATTCAATCA AATCGATCCA ACCAAGACTA CGCCGCAGGA GTTAATCAAC TGGGATGGTC ACCCAACCTA TAACTTCGAC GTGCTCGATG GCTTGACCTA CAAGATTGAT GTCACTCAAC CAAGCAAGTT CGACCGCGAC TGCGCCGTCG TTAATGCCAA TGCTAACCGT ATCGTCGATT TAAGCTACAC AGATGCCAAC GGTAAAGTCT TCACTGGCGA AGAGTTTGCG GCCAAAGAAT TTATCGTGGC CTCAAATAAC TACCGCGCCT TTGGTGGCAA GTTTGCCGGT ACAGGCAGTG ATCATGTGGT ACTCGAACTG CCAGATACTA ACCGTGAAGC CTTAGCTGCC TACATCACAG CGCAATCTAA GTTCAACGAA ACCACAGGCA AGTATGAAGG CATGGTCAAC CCAAGTGCTG ACTACAACTG GGATTTCAAA ACCATCAGCA CCAATGTTGC GTTAGATATT CGCTTCCAGA CCCAAGATAG CGATAAAGCC GCTACCTTTA TCGAAGCCAA TAAACAACGC GAAATGACCA AGATTAGTAA AGATGAACTC GGTTTTGCCG TGTACCGCAT CAACCTAAGC CAAGATAAAG CGAAGTAA
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Protein sequence | MLNKKLLAVM ITAALGVSAC GSDDEQIVQA DLRVLETTDL HTNIMDFNYY SGKEDPTIGL ARTASLIHAA RKEAKNSVLV DNGDLLQGSP MGDYMAKVGL QMGDVHPAYK AMNLLDYEVG NIGNHEFNYG LDFLNKSLHG AEFPYINANV YCADDNGCWN DVKKGEHLFT PYIIKEKQIV DSEGNNQTIK IGYIGFVPPQ ILLWDKQNLT GKVTVEDIVA TAKKYVPEMK AKGADLIIAI PHSGIGSTEN PGDPMAENAT YALTYVDGIN AILFGHSHSI FPDAKYADLP NTDVTKGLLN GVPAVMPGRW GDNLGVVDFK LERKDGKWSV LSATTKARPI YDGATKTPLV EADAAIHDAV AAEHQGTLAF VDEPIGVAAA DMYSFLTLVQ DDPTVQIVSD AQIANVKAKL PEALKDLPVL SASAPFKAGG RHGTTSDADQ YVQVDKGALT FKNAADLYLY PNTMVAVKAT GAELKDWLEC SANQFNQIDP TKTTPQELIN WDGHPTYNFD VLDGLTYKID VTQPSKFDRD CAVVNANANR IVDLSYTDAN GKVFTGEEFA AKEFIVASNN YRAFGGKFAG TGSDHVVLEL PDTNREALAA YITAQSKFNE TTGKYEGMVN PSADYNWDFK TISTNVALDI RFQTQDSDKA ATFIEANKQR EMTKISKDEL GFAVYRINLS QDKAK
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