Gene Shewmr4_1521 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1521 
Symbol 
ID4252099 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand- 
Start bp1788930 
End bp1789601 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content49% 
IMG OID638118120 
ProductGntR family transcriptional regulator 
Protein accessionYP_733656 
Protein GI113969863 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.000000831441 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.527855 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCGAA CTACGCCTAT AGTCCATAAA ACCCGCACCC AATTAGTTGT AGAAGTGCTG 
AGAGAGAAAA TTCTTTCGGG TGATATAGCC GCAGGGGAAC CACTCAGACA AAGCGCCTTA 
GCCGAGGCCT TACATGTAAG CCGTATTCCC GTGAGAGAAG CCTTACTACA GCTGGAGGCG 
GAGGGGCTTG TGAAGTTCGA ACCCCACAAA GGGGCGACCG CGACCGAATT ATCCGTTGAA 
CAAGTGACTG AGCTTTTTGA ATTACGCGCC ATGATCGAGA CCGATCTACT CGCCAAAGCC 
ATACCACGAC TTCAAGAAGA AGATTTAATA AAAGCAGAAC GCGTATTGGA GCAATTGGAA 
TCGGCCTTTA AACATGAAGA TGCCGTCGCC AGTTGGAGCG AGCTAAATAC ACAGTTTCAT 
ACCTGTTTAT ATCAAGCCGC CAATCGTCCA CATACGCTAG AGGTTGTCCA CGGCCTCAAT 
ACTAACTGCG ATAGATATAT CCGTTTGCAA TTGCTGCTCG CAGGAGGTAT TCCCGCAGCA 
GAGCACGAGC ACCGTGAACT GCTCAACTAT TGCAAACAAA GAGAAACAGA GAAAGCCACG 
GCGTTGCTGC GACATCATAT TTTGCATGCC GCAATGACAA TTCGGGATCT CGTCGCCAAA 
CAGGTGGTCT AG
 
Protein sequence
MSRTTPIVHK TRTQLVVEVL REKILSGDIA AGEPLRQSAL AEALHVSRIP VREALLQLEA 
EGLVKFEPHK GATATELSVE QVTELFELRA MIETDLLAKA IPRLQEEDLI KAERVLEQLE 
SAFKHEDAVA SWSELNTQFH TCLYQAANRP HTLEVVHGLN TNCDRYIRLQ LLLAGGIPAA 
EHEHRELLNY CKQRETEKAT ALLRHHILHA AMTIRDLVAK QVV