Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1480 |
Symbol | |
ID | 4252058 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1733803 |
End bp | 1736304 |
Gene Length | 2502 bp |
Protein Length | 833 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638118079 |
Product | hypothetical protein |
Protein accession | YP_733615 |
Protein GI | 113969822 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGCTTA ATTTGGCATG GCGCCTGTTT AAGCGCGAGC TGCAACAGGG GCAGTTGTTA TTGATAATCC TCGCCATTAC CTTGGCGGTG CTGTCGGTCA GTGGTCTTGC GCGGGTCAGT GAGCGTTTGC AGGTCGCGAT AAACGGGCAA GCGACTCAGT TTATCGCCGC CGATCGCATC ATCGACTCTC CCGTTCAAAT TGATGCCAGC ATTCTGGCTA AGGCCGACGA GCTTGGTCTT AAGCATGTGA CCAATATGCA ATTTAACTCT ATGGTGTATG CGGGGGATAA GTTTCAGTTA GTCACAGTGC GGGCGGTCGA GTCTGGTTAT CCACTTAAGG GCGACATAGA ACTTAAAGCG GCCAATGGCC AAGATGAAAA AGCCCAAGGC TTGCCCCACG CCGATGAGGT GTGGTTTGAG AGTCGCTTAG GGGGACTCTT GGGATACCCG CAAACACTGG AGTTAGGCAA CAGTGAGTTT CGTTTAAGTC AAGAAATCAG CCGCTTACCC GATGCGGGTT TTAATCCATT CGCTTCTTCC CCCGTGGTGT TAATGCGGAT TGAAGATGTC GCCAAGACTG GGGTTATTCA ACCCGGCAGC CGAGTGACCT ATCTGTATCA ATTTGTGGGT GAAGAAAGCG CCTTCAGCGC CTTTGAAAAT AGCGTTAAAC CGCTGCTGAA TAATTCCCAG CGCTGGGTCG ATGTGCAGTC TGGCGACTCA CCGATAGCGG GCGCGGTGAA GCGGGCGGAG CGTTTTTTAC TGCTGGCAAG TTTGCTCGGT ATTGCGCTGG CCTGCGCCGC GATTGGGATT GCTGCCCAGC GTTACTGCCA ACGTCATTAT GATGTGGTCG CCATGCTCAA AACCTTTGGC GCCTCATCAA CTCAAATCCG TCGACTATTC GGCATCCATT TACTGCTGGT GACGCTGTTT GGCATTGTGC TGGGGTTAAT CGGCGGGGCA CTGCTGGATT TAGGCATTAA TCAACTATTA CCCCCTGAAA TCGCTGCTTA TTCGCCGCCG TTGACTCGGC CGCTACTGCT TGGGATCAGC ACAGGGCTTA TCAGCGCCTT TATGTTTTCG GCCTATCCTT TAATGCGTCT GCTGGCCATT CCGCCACTGC GCGTTTTACA AAGGCAACTC GAGGGCTTGC AGCTCGGCAT GTGGCTGCAT TTACTCCTCA GTTTAGGGGC GATGGCACTT TTGGGATATT TGTATTCCCA AAGCTGGGCA CTGACACTGA CGGTGGTCGC GGCTGTGCTG CTACTGGGCG TATTGCTCAG TATTTTAGGC TTTGTGATGA TCCGCCTTGG TCACAGTGTC GGCATGAAAA CCACCAATCC CTTGCAACTG GCTCTCGCGG GGTTACGCCG CCGCGCGCGG CAAAATGCGG TGCAATTGGT GGGCTTTAGT GCGGCCTTGG TATTGCTATT GACCATTTTG GCCCTGAGGC AAGATTTACT GAACGAGTGG CAAAAACAGC TGCCCGAGAA TGCGCCCAAC TATTTCTTGG TCAATATCGC CCCCGATGAT GCTAAGCCAT TAAATGACTT TATGGCGCAA AAGGGCATAG CTGCAACGGA TATCTATCCC GTGATTCGCG GCCGCTTGAC TCAAATCAAT GGTGAAACCT TGATTTCCGA CGAGCAGGCC GAAGCGGGAG AGAAGGGGCG AGTAGGGATT TCCCGCGAGC TTAATCTCAC CTGGCGCAAT AGCTTACCCG CCAACAATGA GTTAGTTGAA GGGCATTTTA ATCAGGCGGC GGATGAGGTT TCTGTCGAGT CAGGTGTTGC CGATCGTTTA GGACTAAAGC TAGGCGATAC GCTGACTTAC ATGATTGATA ACCAAGAGCT TAGGGTCAAG GTCGCTAGTA TCCGTGCCGT GCACTGGGAA ACCATGCAAC CAAACTTCTT TATGATCTTC ACTCAAGAAG CGCTGGCGCC CTTTGCCTAT ACCTCGATGG CAAGCTTCTA CCTCGACGAT AAAAAAACGG ATGTACAAGG GAGTGATGCT CCGAAGAGCA CAGTGATCCT CGAACTTATC CAGCAGTTCC CAACGGTGTC GATTATCGAT GTCGGCGCCA TGGTGGGGCA ATTGCGGCAG ATTATTGAGC AGGTGTCCCT GTCGCTGACG TTGGTCTTGG TTCTCGTTTT ACTGGCCAGT TCTTTAGTGC TTATTGCGCA AACCGAGGCG GGAATGGCGA CACGCCAGCG TGAACTCGCA GTGCTGCGCA CCTTTGGCGC CTCAGGCTGG TTACTGCGTA GCGCCACTGG GCTTGAATTT GCGTTACTGG GGGGCATAGC TGGGGTACTT GCAGTGATAG TGGCCGAATT TGCGCTGTAT CTGTTAAAGA CCCAAGTGTT TGAACTCAAT GTGTATATGC ACTGGCCCTG GTGGGGGATT GCCCCTGTCT GCGGTGCCTT GTTAGTTGCA TTACTGGGTG TTTGGCGCTG CCGTCAATTG CTCAATCAAT CCTGCGCCGA ATTATTAAAA GCGGGCGCTT AA
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Protein sequence | MELNLAWRLF KRELQQGQLL LIILAITLAV LSVSGLARVS ERLQVAINGQ ATQFIAADRI IDSPVQIDAS ILAKADELGL KHVTNMQFNS MVYAGDKFQL VTVRAVESGY PLKGDIELKA ANGQDEKAQG LPHADEVWFE SRLGGLLGYP QTLELGNSEF RLSQEISRLP DAGFNPFASS PVVLMRIEDV AKTGVIQPGS RVTYLYQFVG EESAFSAFEN SVKPLLNNSQ RWVDVQSGDS PIAGAVKRAE RFLLLASLLG IALACAAIGI AAQRYCQRHY DVVAMLKTFG ASSTQIRRLF GIHLLLVTLF GIVLGLIGGA LLDLGINQLL PPEIAAYSPP LTRPLLLGIS TGLISAFMFS AYPLMRLLAI PPLRVLQRQL EGLQLGMWLH LLLSLGAMAL LGYLYSQSWA LTLTVVAAVL LLGVLLSILG FVMIRLGHSV GMKTTNPLQL ALAGLRRRAR QNAVQLVGFS AALVLLLTIL ALRQDLLNEW QKQLPENAPN YFLVNIAPDD AKPLNDFMAQ KGIAATDIYP VIRGRLTQIN GETLISDEQA EAGEKGRVGI SRELNLTWRN SLPANNELVE GHFNQAADEV SVESGVADRL GLKLGDTLTY MIDNQELRVK VASIRAVHWE TMQPNFFMIF TQEALAPFAY TSMASFYLDD KKTDVQGSDA PKSTVILELI QQFPTVSIID VGAMVGQLRQ IIEQVSLSLT LVLVLVLLAS SLVLIAQTEA GMATRQRELA VLRTFGASGW LLRSATGLEF ALLGGIAGVL AVIVAEFALY LLKTQVFELN VYMHWPWWGI APVCGALLVA LLGVWRCRQL LNQSCAELLK AGA
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