| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1467 |
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| Symbol | |
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| ID | 4252045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1715544 |
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| End bp | 1716419 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638118066 |
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| Product | ribosomal large subunit pseudouridine synthase B |
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| Protein accession | YP_733602 |
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| Protein GI | 113969809 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.807732 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAA AATTGCAGAA AGTCTTGGCC CGTGCAGGCC ATGGCTCCCG TCGTGAGATG
GAGGCATGGA TTGCTGCAGG TCGAGTTAGT ATTGATGGCG TAATTGCCAA TCTTGGCGAC
CGTATCGAAG CCGATGCCAA AGTACGTATC GACGGTCGAG CCATATCGCT TAAGTCCGCC
GATGATGTGA TTTGCCGCGT GCTCGCCTAT CACAAACCCG AAGGTGAGAT TTGTAGCCGT
AAAGACCCTG AAGGTCGTCC AACCGTGTTT GACCGTTTGC CGAAGGTGCG TGATTCGCGC
TGGGTTGCGG TAGGGCGTCT GGATATTAAC ACTTCAGGCT TATTGCTGTT TACCTCAGAC
GGTGAACTCG CTAACCGCTT GATGCACCCT TCTAACGAAG TTGAACGTGA ATACGCGGTA
CGTACCTTTG GTGAAGTACC AGAGGCTGCG GTACAACGTC TGCGTACCGG CGTAATGTTA
GAAGACGGTA TGGCACAGTT CGATGCCATT AAAGCCGCAG GCGGCGAGGG TATGAACCAA
TGGTGGCACG TATGTCTACG TGAAGGCCGT AACCGCGAAG TGCGTCGTTT ATGGGAATCC
CAAGAGGTGC AAGTAAGCCG TCTTATCCGT GTGCGTTACG GTATGGTGGA ATTGCCTAAA
TCGCTGCCTC GTGGTGGCTG GGTTGAATTG CCTATTGAGC AAGTTAACTA CCTGCGCCAA
TTAGCGGGTC TTGAACCTGA AACTCGTACT ATGCTGGCCG CCGATAAACA CAGCGTGGCC
CGTGCTCAGG TGAAGAGTGC AAAAATTCGC CGCGCCGTAC GCAAGCATAA AGTGACAGCG
ACGCCTAAGG CTAAGCCAAC ACGTCAGCGT AGTTAA
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| Protein sequence | MSEKLQKVLA RAGHGSRREM EAWIAAGRVS IDGVIANLGD RIEADAKVRI DGRAISLKSA
DDVICRVLAY HKPEGEICSR KDPEGRPTVF DRLPKVRDSR WVAVGRLDIN TSGLLLFTSD
GELANRLMHP SNEVEREYAV RTFGEVPEAA VQRLRTGVML EDGMAQFDAI KAAGGEGMNQ
WWHVCLREGR NREVRRLWES QEVQVSRLIR VRYGMVELPK SLPRGGWVEL PIEQVNYLRQ
LAGLEPETRT MLAADKHSVA RAQVKSAKIR RAVRKHKVTA TPKAKPTRQR S
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