| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1411 |
|---|
| Symbol | |
|---|
| ID | 4251989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 1643414 |
|---|
| End bp | 1647706 |
|---|
| Gene Length | 4293 bp |
|---|
| Protein Length | 1430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638118010 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_733546 |
|---|
| Protein GI | 113969753 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.017718 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCCT CGGACAATAC TAAGAACAAC ACTATGCCGA AAATACTCTT AAAAATCGTC
TTAATCGCTT TTTTTGGCAT TCATGCATTA GAAGACGTAA ACGCATCTCC ATTTTCAAAT
AAATCACCTA TTATTCTCCA GTCACAATCG TTTGGTGTAC CAGAAGGGCT TTCCCAAAGT
ACTGTTACAT CGATAGTTCA GGACCATGAT GGCTATCTAT GGATTGGGAC ATTTAATGGA
CTTAACCGCT TTGATGGAAA ACACTTCAGA CATTTCTATT CAAATGATCC TAGAACAGGT
CTTCCTAGTT CTTTTATTAG AAGCTTACTC GTTGATGCTC AAGGTCTATT ATATGTTGGA
ACAGACAACG GCTTAGTTGT TTACGATAAA CTTAAAGACT CATTCTCTCC TTATAGTATA
TCAGCAAAAA ACGCCCCTAT TTGGAGCCTC AACTCATCTA CTAATAGCTT AATCGTTGGC
ACGAATAATT CAATAATCGA TATAAGTAAC AAAGAAAAAA CATACGAACT CTTAAGTAAA
GGACTAGGTG AAATAAAAAA GGTCATCAAA GTAAATGATA CTTACTACAT AAGAGATTAT
GCAGGGAAAT TATTTTCTTT GACAAATGAT GAATTAAAAG AAATAGCAAA TCATACTATA
GATTTCGATG AAATAAAACA AAGTGAAGTG ATAGTATCGC TCAGCAATGG ATTATATGAG
TATAATGAAA ATAAATCACT AAAGATAACT GAAGAATCAT TTTCTCAATT CGCAAAGTAC
GAAAGTACAG TTTACGGTTT TAATGACGGC AAAATAATTA ATGTTTCTAA TGGAACCACT
ATCGGTTCTA TTCCTTCAGA AAAAGCTGAC AAAATATCTT CATTCCTTGC AACTGAGGAC
ATGTTTGTAC TAGGAACTAT TGATAAGGGA TTTATCATTG TAAAAAATGT GAACAACTTA
GTACAACAAA CTAATTTAGT ACAAGACAAT GCGTGGCATC TTACAAAAAA TACACAGGGT
TTCCTTGTAT CATCTGAATC TGAAAGAATA GATCTGTTCG ATATGGATTT CAACCGAATT
AATAGCTTTG ATACTCAATC ACAAGGCTAC AAATATGCAA TTCTTAATAA AGATGGATTA
TATTTTGGAA CTCATTCCGG TTTGTTTTTA AAGAACAAAG AAAATCTAGT ACTAATTAGT
AAAAAATCAA TATCATCTTT ATCTAGCAGT AAAGATAACT CTATCATAAC CGCTGGAACA
TCAGATGGTA AGGTATTGAT AATAAAAAAT AAAGAAGTAA CCAATATAAT TGACACCCAA
AAAAATGAGC CTATTTTCGA TATTGAATTA GTGACACTGA ATGATATTTA CATAGCAGGC
CAAGGTGGTT TCAAAAAGTA TGAGAATGGA TTATTACAAA ATTTAGGGGA AGAAATAACA
TATAGCATAG TCGATGGTGA TGATGGCATT TACTTTGGAA CATCTACATC ACTAATGTTT
TACAATAGAG AAAACAACAA TGTTTCCCAA GTATTTACCA ACAAAAAAGA AATTTATTCA
ATCACAAATA ACAATGACTT AGTGATAGCT GCATCATTAG GTGAAGTAGT TATATATGAA
AAGAAAAGTA AAAAAATATA TACTTTAAAT ACTGCGAACG GAAGTCAGTA TGAATACAAT
TCGCCGAGCG CAATAGATGT GAATGGTTAT GTTCTACTTG CAGGAATAAA TGGTGTTAGT
ATTTTACACC CAAAAAATGT CATAAACTAT ATTAAAAACA AAGAAATCAA CAAAACAGAA
ATATCTGACT TCCTAGTTTT CAATGTGCCA CAAGAAAATG ATAGCATTTT CTTTAATAAC
AAAAATTCAA TTATTAATGA AATAACCTTA AAATATTCAG ACTACCCATT TTCCTTTAAC
TTTATTTCAC CTCTGTCAGA AGATTCGTCT ACTGATTATC ATTATAGGAT GTATGGCCTT
TCTGACACAT GGATATCGGC GAATGGAACA AATTCAGCTA CATATACAAA TTTGTCTCCT
GGAAAATATC AGTTTCAAGT ATATGCAGTC AATTCTCTTT CCAGTAAACA ATCCCCCGTA
AAGGAGGTTA CTGTCATTAT TACTCCTCCA TGGTGGTCTT CAACTCAAGC CAAAGTATTT
TATTTCATTA TTTTAATGCT TTTCTCTCTC TTTATCTTCA AAGCAATCCT ACGCAAACGA
GAAATCCAAC GACAAATTGC ATTAAGCGAA GAACGCCTAA AGCTTTCTTT ATGGGGAAGT
GGCGATGAAA TGTGGGACTG GGATATTGAG ACCGGCAATA TTTTCCGTTC GAATATTTGG
GGGGCATTGG AATTTCCGAG GGATGGTCAC CGTTCTGGCA ACAGTGATGA AGAAAGTAAT
ATTCATCCCA TGGATCAAGA ACGTGTAAGA GAAGCGCTCA ATAAACACTT CTACGGTGAA
ACCGATCATT TTGAAGCGGC ATATAGAGTT AAAGGCAAAG ATGATAGTTG GATCTGGATC
CTAGACAGAG CGAAAATCGT AGAAAGAGAC GACAAAGACA ATGCGCTACG GATGACGGGG
ACAATTAAAA ACATCAGCCA GTTCAAGCAA AAGGAAGAAC AATTAAAACT GTTCGAAAAA
GCCATTGAAA ATATTTCCGA AGGTATGTTT ATTCTCGACA GTGAATATCG ATTTGTTGAG
GTGAACGAAG CGTGCTGTAG AATCTCTCAG CGTAATCGAA CTGATTTTAT TGGTAATCTG
CTTACCTTCG ATTTATATCC GGAGTCCTTT ACTAATCAAA TTCGTACCAT GTTAAAACAA
CAAGGTCGTT GGGCCAGCGA AGTTGAAGCT AGCCGTGGTG ACAAGAGCCA TTTCCATATG
GAACTCACCA TTGATGCCAT TTACGATGAA TTAGGTGAGT TATCGCATTA CGTTGGGGTA
TTTTCTGATA TATCGAGACG TAAACAGCAA GAAGAAGAGC TTCGTAAACT CACCAACAAT
GACCTATTAA CGGGGCTGCC TAATCGCTCA AACTTGCAAG TCACATTAGG AAACTTGGTT
AATAAAGAAA TTACCCATGC CTTAATGGTA CTCGACCTCG ACAATTTTAA GCGTATCAAT
GACTCATTAG GCCATCAAAT TGGTGATCAG TTACTCAAAC TCGTTTCCGT CAGAATTAAG
TCTGTTGTAC CTAAAAACAC CAGCATCTAT CGCCTAGGTG GCGATGAGTT TGCGATTGTA
TTAGATAAAA CATCTGACAT TAGTGCCTGT GCCGCGATTG CAGGACGTGT CATTGAAGCC
TTTAAAACCA TATTTGAAAT CGGCAATGAG CAGCTGGTTT TGGGCGTAAG TATTGGTATT
GTTTTCTACC CTGAAGATGA ACAGAGTGAG CAAGCACTTC TGAGAAAAGC AGATATTGCC
ATGTATCATG CTAAATCTGC CGGCGGTAAT TGTTACCAAT TCTACTCAGA ATCCCTTAAC
CAACATGCGA TTAAACAATT AGAAATTGAA AACCTAATTC GTGAAGGATT AAAAGAAGAT
TTATTTGAGG TGTATTATCA ACCCAAAGTC GATCTTAAAA GTGGTCACGT CGCGGGGATG
GAAGCCTTAG TCCGTTTAAA TCATCCCACC CGTGGACTGG TCCCACCAAA TGATTTTATT
CCTCTTGCGG AAGAAAATGG TCTCATTATC GAAATCGGTG AAATTGTGCT TAGGAAAGCC
TGTTTTGCTG CGCAGAAATG GCGTGAACAA GGGCTATTTA AAGGAAGAGT CGCCGTCAAT
TTATCGTCAC GTCAGTTTGC CCTACCCGAT TTACAGCAAC GAATTGAAGC TATTTTACGG
TTAACACAAT TGCCAGCAGC ACATCTTGAA CTCGAAATCA CCGAAGGGAC GGTTATTAAG
CAGCCAGAAA TGGCTATAAC CGTTATGCAA CAATTAGCGA AGATGGGGGT TAGTCTAGCG
TTAGATGACT TCGGTACGGG TTACTCTTCG CTTTCTTACT TAAAACGATT CCCTATTCAT
ACGCTCAAAA TCGATAAAGC CTTTGTCGAT GATATTGATA AATCTGACCG AGATTTGAAG
ATGGTCGATT CGATCATCAC CATCGCTCAC AATATGGGTC TGTCGGTTGT CGGTGAAGGT
GTTGAACAAG CCGCACAACT AAATATCCTG CGCGCCCTTA ACTGCGAAGA AATACAAGGT
TATATCTTTA GCAAAGCGAT TAATGAAACC GAATTTACTC AATTGCTGCA AGATGATCGA
AGTAAATTCA TGCCCCACCA CAACATTATT TGA
|
|---|
| Protein sequence | MASSDNTKNN TMPKILLKIV LIAFFGIHAL EDVNASPFSN KSPIILQSQS FGVPEGLSQS
TVTSIVQDHD GYLWIGTFNG LNRFDGKHFR HFYSNDPRTG LPSSFIRSLL VDAQGLLYVG
TDNGLVVYDK LKDSFSPYSI SAKNAPIWSL NSSTNSLIVG TNNSIIDISN KEKTYELLSK
GLGEIKKVIK VNDTYYIRDY AGKLFSLTND ELKEIANHTI DFDEIKQSEV IVSLSNGLYE
YNENKSLKIT EESFSQFAKY ESTVYGFNDG KIINVSNGTT IGSIPSEKAD KISSFLATED
MFVLGTIDKG FIIVKNVNNL VQQTNLVQDN AWHLTKNTQG FLVSSESERI DLFDMDFNRI
NSFDTQSQGY KYAILNKDGL YFGTHSGLFL KNKENLVLIS KKSISSLSSS KDNSIITAGT
SDGKVLIIKN KEVTNIIDTQ KNEPIFDIEL VTLNDIYIAG QGGFKKYENG LLQNLGEEIT
YSIVDGDDGI YFGTSTSLMF YNRENNNVSQ VFTNKKEIYS ITNNNDLVIA ASLGEVVIYE
KKSKKIYTLN TANGSQYEYN SPSAIDVNGY VLLAGINGVS ILHPKNVINY IKNKEINKTE
ISDFLVFNVP QENDSIFFNN KNSIINEITL KYSDYPFSFN FISPLSEDSS TDYHYRMYGL
SDTWISANGT NSATYTNLSP GKYQFQVYAV NSLSSKQSPV KEVTVIITPP WWSSTQAKVF
YFIILMLFSL FIFKAILRKR EIQRQIALSE ERLKLSLWGS GDEMWDWDIE TGNIFRSNIW
GALEFPRDGH RSGNSDEESN IHPMDQERVR EALNKHFYGE TDHFEAAYRV KGKDDSWIWI
LDRAKIVERD DKDNALRMTG TIKNISQFKQ KEEQLKLFEK AIENISEGMF ILDSEYRFVE
VNEACCRISQ RNRTDFIGNL LTFDLYPESF TNQIRTMLKQ QGRWASEVEA SRGDKSHFHM
ELTIDAIYDE LGELSHYVGV FSDISRRKQQ EEELRKLTNN DLLTGLPNRS NLQVTLGNLV
NKEITHALMV LDLDNFKRIN DSLGHQIGDQ LLKLVSVRIK SVVPKNTSIY RLGGDEFAIV
LDKTSDISAC AAIAGRVIEA FKTIFEIGNE QLVLGVSIGI VFYPEDEQSE QALLRKADIA
MYHAKSAGGN CYQFYSESLN QHAIKQLEIE NLIREGLKED LFEVYYQPKV DLKSGHVAGM
EALVRLNHPT RGLVPPNDFI PLAEENGLII EIGEIVLRKA CFAAQKWREQ GLFKGRVAVN
LSSRQFALPD LQQRIEAILR LTQLPAAHLE LEITEGTVIK QPEMAITVMQ QLAKMGVSLA
LDDFGTGYSS LSYLKRFPIH TLKIDKAFVD DIDKSDRDLK MVDSIITIAH NMGLSVVGEG
VEQAAQLNIL RALNCEEIQG YIFSKAINET EFTQLLQDDR SKFMPHHNII
|
|---|
| |