Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1408 |
Symbol | fadJ |
ID | 4251986 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1639736 |
End bp | 1641865 |
Gene Length | 2130 bp |
Protein Length | 709 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638118007 |
Product | multifunctional fatty acid oxidation complex subunit alpha |
Protein accession | YP_733543 |
Protein GI | 113969750 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type [TIGR02440] fatty oxidation complex, alpha subunit FadJ |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.682572 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000547588 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAAAAGA CATTTAATTT AACCCGCCGT GAAGACGGTA TCGCCATTCT AACGATGGAC GTACCCGGCG AAACCATGAA TACCCTCAAG GCAGAATTTG GCCCTGAGAT CAGTGAGATT CTGTCTGAGA TTAAACGCGA TAGCAGTATC CGTGGCCTAG TGCTGATTTC GGGTAAAAAA GACTCCTTCG TAGCTGGGGC GGATATCTCT ATGCTCGACG CTTGCCAAAC GGCGGGCGAT GCTAAAGCCT TATCCCAACA AGGGCATGTG GTGTTTAACG AGTTAGAAGC CTTGAATATC CCTGTGGTTG CCGCGATACA TGGCGCTTGT TTAGGGGGCG GTTTAGAGCT TGCGCTTGCA TGCCATCAAC GTGTGTGTAG TGATGATGGC AAGACCATGC TGGGTGTACC CGAAGTGCAA CTCGGTTTAT TACCCGGTGG CGGCGGTACT CAGCGTTTGC CTCGTTTAGT GGGGATCACC ACTGCCTTGG ATATGATGTT GACTGGTAAA CAAATCCGTC CGAAACAAGC GTTAAAGATG GGCTTAGTTA ACGATGTGGT GCCACAGACG ATTTTACTGC AAACCGCGGT GGAAATGGCG CTCGCGGGTA AGCGCACGGC GAAACCAGTT AAAAAATCGC TGGTCAATCA ATTACTCGAA GGTACAGGAT TCGGTCGTAA CATTATTTTC GATCAAGCCG CCAAGCAAGT CGCTAAGAAA ACCCAAGGCA ACTATCCTGC GCCGGCAAAA ATTATTGATT GCGTGCGCCA AGGTATGGCT AAGGGAATGC AAAAAGGGCT TGAGGTGGAA GCCAGCCATT TTGCAGAGCT GGTGGTGTCG AAAGAATCAG AGGCGCTGCG CAGTATTTTC TTTGCCACCA CAGAGATGAA GAAAGAAACT GGCGCCGAAG GGGCGACACC ACGTAAAGTC AAAAAAGCCG TGATCTTAGG TGGCGGTTTG ATGGGCGGTG GTATTGCTTC GGTCACGACG ACTAAGGCTA AAATTCCTGC AAGGGTAAAA GACATTAACG AAAAGGGCTT AAGCAATGCG CTTTCTTACG CCTATAAGTT ATTGGATAAA GGCGTTAAAC GTCGTCATAT GACGCCAGCC GTTCGCGACA ATTTAATGGC ACTGATGACA ACGACGACCG AATATAAAGG CGTTAAGGAC GCTGATATTG TTGTTGAAGC CGTATTTGAG GATTTAGCGC TTAAACATCA GATGGTTAAA GATATTGAGC GTGAATGCGG TGAGCACACG ATTTTTGCAT CTAACACCTC ATCTTTACCC ATTGGCCAAA TTGCACAAGC GGCCAGCCGT CCTGAAAATG TGATTGGCTT ACATTATTTC TCACCAGTAG AAAAAATGCC GTTGGTGGAA GTGATTGCCC ATGCGAAAAC GTCTCCTGAG ACGATTGCTA CCACAGTGGC CTTTGCCCGC AAACAGGGTA AAACGCCAAT CGTGGTACAA GACGGTGCCG GTTTTTATGT TAATCGTATC CTCGCACTTT ACATGAACGA AGCTGCGCAA TTGCTGCTGG AAGGGCAGAG TATTGAGCAC TTAGACAAAG CCTTAGTGAA GTTCGGTTTC CCCGTTGGCC CTATCACTCT GCTCGATGAA GTGGGTATCG ATGTGGGTGC TAAAATCGCT CCAATCCTTG AAAAAGAACT GGGTGAGCGC TTTAAAGCCC CTGCAGCCTT CGATAAGTTA CTGAGCGATG ATAGAAAAGG CCGTAAAAAT GGCAAAGGTT TCTATCAATA TGCTGCTGGC AATAAAGCGC CGAGCAAGAA GAAAGCCGTG GATGAAAGTG TATATGGCGT ATTAGGTATC AAACCGGGTA TCGATAAAGA AATGAGCGCG GTAGCGGAAC GTTGTGTCGT GCAAATGCTC AATGAAGCTG TGCGCTGCTT AGATGACGGC ATTATTGCTT CACCACGCGA TGGTGATATT GGCGCTATCT TCGGTATTGG TTTCCCACCA TTCTTGGGTG GCCCATTCCA CTATATCGAT ACTCTAGGGG CCGATAACTT AGTCAAGATA CTGGAACGTT ACCAGGCTCA ATACGGCGAC CGATTTGAGC CATGTCCACG TCTTAAGGAG ATGGCGGCAG AAAAGACACG TTTCTTCTAA
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Protein sequence | MEKTFNLTRR EDGIAILTMD VPGETMNTLK AEFGPEISEI LSEIKRDSSI RGLVLISGKK DSFVAGADIS MLDACQTAGD AKALSQQGHV VFNELEALNI PVVAAIHGAC LGGGLELALA CHQRVCSDDG KTMLGVPEVQ LGLLPGGGGT QRLPRLVGIT TALDMMLTGK QIRPKQALKM GLVNDVVPQT ILLQTAVEMA LAGKRTAKPV KKSLVNQLLE GTGFGRNIIF DQAAKQVAKK TQGNYPAPAK IIDCVRQGMA KGMQKGLEVE ASHFAELVVS KESEALRSIF FATTEMKKET GAEGATPRKV KKAVILGGGL MGGGIASVTT TKAKIPARVK DINEKGLSNA LSYAYKLLDK GVKRRHMTPA VRDNLMALMT TTTEYKGVKD ADIVVEAVFE DLALKHQMVK DIERECGEHT IFASNTSSLP IGQIAQAASR PENVIGLHYF SPVEKMPLVE VIAHAKTSPE TIATTVAFAR KQGKTPIVVQ DGAGFYVNRI LALYMNEAAQ LLLEGQSIEH LDKALVKFGF PVGPITLLDE VGIDVGAKIA PILEKELGER FKAPAAFDKL LSDDRKGRKN GKGFYQYAAG NKAPSKKKAV DESVYGVLGI KPGIDKEMSA VAERCVVQML NEAVRCLDDG IIASPRDGDI GAIFGIGFPP FLGGPFHYID TLGADNLVKI LERYQAQYGD RFEPCPRLKE MAAEKTRFF
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