Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1385 |
Symbol | secF |
ID | 4251404 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1612889 |
End bp | 1613836 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638117984 |
Product | preprotein translocase subunit SecF |
Protein accession | YP_733520 |
Protein GI | 113969727 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0341] Preprotein translocase subunit SecF |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00983524 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000000302266 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTAGAAA TTTTGTCTTT AAAACGTACG GTTAACTTCC TCCGTCATGC GCTGCCTATC AGTATCATGT CTGCCATTTT GGTATTTGGT TCGCTGGTGT CCTTGGCGAC CAAAGGCATT AACTGGGGTT TAGACTTTAC CGGCGGTACT GTGGTTGAGA TGGAGTTCAC TCAACCTGTC GATTTGAACG TGTTACGTAC TAAGCTGTCT GCGCCTGAAT TGGACGGTGC AGTGGTGCAA AACTTCGGTT CGAGCCGTGA CGTATTAGTG CGTCTATCGG TGAAAGAAGG CGTGAGCAGC GATGTACAGG TCAAATCTGT CATGGCTGCG GCTCAACAAG TGGATGCGGG CGTTCAACAG AAACGTGTTG AATTCGTTGG TCCTCAAGTG GGTAAAGAAC TGGCCGAACA GGGCGGTTTA GCGGTATTGG TCGCGCTTAT CTGTATCATG ATCTACGTGT CTTTCCGTTT CGAATGGCGT TTAGCCTTCG GTTCGGTAGC AGCACTTGCC CACGACGTGA TTGTGACCTT AGGTGTGTTC TCTGTGTTCC AACTGGAATT CGACCTGACC GTATTAGCCG GCGTGTTAAC CGTTGTGGGT TACTCACTCA ACGATACCAT CGTTGTGTTT GACCGTATCC GTGAAAACTT CCTCAAGATG CGTAAGAGCG AGCCAGAAGA AGTGGTCAAC GTCTCTATCA CGCAAACCAT GAGCCGTACC ATTATCACTA CGGGTACGAC GCTGGTGACC GTTGTGGCGC TGTTCCTGAA GGGCGGCACT ATGATCCACG GTTTTGCGAC AGCACTCTTG TTGGGTATTT TCGTCGGTAC CTATTCTTCT ATCTACGTAG CAAGTTACCT TGCGATCAAA CTGGGCATTT GCCGTGAGCA TATGATGCCA GTTGAAGTCG AGAAAGAAGG TGCTGACCAG CCTTCGATGA TGCCTTAA
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Protein sequence | MLEILSLKRT VNFLRHALPI SIMSAILVFG SLVSLATKGI NWGLDFTGGT VVEMEFTQPV DLNVLRTKLS APELDGAVVQ NFGSSRDVLV RLSVKEGVSS DVQVKSVMAA AQQVDAGVQQ KRVEFVGPQV GKELAEQGGL AVLVALICIM IYVSFRFEWR LAFGSVAALA HDVIVTLGVF SVFQLEFDLT VLAGVLTVVG YSLNDTIVVF DRIRENFLKM RKSEPEEVVN VSITQTMSRT IITTGTTLVT VVALFLKGGT MIHGFATALL LGIFVGTYSS IYVASYLAIK LGICREHMMP VEVEKEGADQ PSMMP
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