Gene Shewmr4_1357 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1357 
Symbol 
ID4251376 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand+ 
Start bp1576417 
End bp1576995 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content45% 
IMG OID638117941 
Productthymidine kinase 
Protein accessionYP_733492 
Protein GI113969699 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1435] Thymidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.694875 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.123525 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCGCAAT TGTATTTTTA CTATTCAGCA ATGAATGCGG GTAAATCCAC CTCTCTATTA 
CAATCTTCCT ATAACTACCG CGAGCGCGGC ATGAATACCT TAGTGATGAC GGCCTCTATC 
GATGACAGAT ACGGTAAAGG TAAGGTGGCA TCGCGTATTG GGATTGAAAC CGATGCCCAG 
GTATTTAGCA GCCATGACAA TCTGATAGAC ATGATCACCA CTGCCCACAA ACAGAATCAC 
TTGAGTTGTG TGCTGGTGGA CGAATGCCAA TTCTTAAGTA AAGAGCAAGT CAAACAACTG 
ACTTATGTTG TTGATAAAAT TGATATCCCT GTTTTGTGCT ATGGTTTACG TACCGACTTC 
CAAGGCGAAC TCTTCACTGG CAGCCATTAT TTGTTGGCTT GGGCCGATAA GTTAGTCGAA 
CTGAAAACCA TCTGTCACTG TGGACGCAAG GCCAATATGG TGGTGCGTCT GGATGGTGAA 
GGGAAAGTGA TGCGCGAAGG TGAGCAGGTG GCGATCGGCG GTAATGAAAG TTACGAATCG 
GTTTGCCGCA AGCATTTTCG TGAATTTATT TGGGATTGA
 
Protein sequence
MAQLYFYYSA MNAGKSTSLL QSSYNYRERG MNTLVMTASI DDRYGKGKVA SRIGIETDAQ 
VFSSHDNLID MITTAHKQNH LSCVLVDECQ FLSKEQVKQL TYVVDKIDIP VLCYGLRTDF 
QGELFTGSHY LLAWADKLVE LKTICHCGRK ANMVVRLDGE GKVMREGEQV AIGGNESYES 
VCRKHFREFI WD