Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1294 |
Symbol | fliR |
ID | 4251227 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1500119 |
End bp | 1500916 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638117879 |
Product | flagellar biosynthesis protein FliR |
Protein accession | YP_733430 |
Protein GI | 113969637 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.755718 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGCTGC TGCTCGACAC CTTAATGCAA ACCATCGCCT CTTATATGTG GCCATTGTTT CGCGTGACCA GCATGCTGAT GGTCATGGTG GTGTTTGGTG CTACGACAAC CCCGACTCGA GTCCGTTTAC TCTTAGCGGT GGCTATCACT CTGGCCATTG CGCCAGTATT ACCGCCCGTT AAGGATGCGG AGCTCTTTTC CTTAAGCGCT GTTTTTATTA CTGCTCAGCA AATTATTATT GGTGTCGCCA TGGGCTTTGT AACCCAAATG GTGATGCAAA CCTTTGTGTT AACGGGCCAG ATCATCGGTA TGCAAACCAG CTTAGGTTTT GCCTCTATGG TCGACCCCGG TTCTGGTCAA CAAACACCAG TGATAGGCAA CTTCTTTTTG TTGCTCGCGA CGTTGATTTT TCTCGCCGTC GATGGACACC TGTTGATGAT CCGTATGTTA GTCGCCAGTT TCGAGACCTT ACCGATTTCG AATCAAGGGT TAACGTTGAC GAGTTATCGC GCGCTAGCGG AATGGGGCTC CTATATGTTT GGCGCGGCAC TGACCATGTC GCTCTCGGCG ATTATTGCCT TGCTGCTCGT TAACTTATCC TTTGGGGTTA TGACTCGCGC CGCGCCGCAG CTGAACATCT TCTCGATAGG TTTCCCAATC ACTATGATTG GTGGACTGCT CATTTTATGG TTAACCTTGA CCCCTGTAAT GGCTCATTTC GAAGAGGTTT GGGCGTCGGC ACAGCTTTTG CTATGTGATA TTTTAGGGCT TCAGTGTCAA GCCGACGGCA TACTCTAA
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Protein sequence | MELLLDTLMQ TIASYMWPLF RVTSMLMVMV VFGATTTPTR VRLLLAVAIT LAIAPVLPPV KDAELFSLSA VFITAQQIII GVAMGFVTQM VMQTFVLTGQ IIGMQTSLGF ASMVDPGSGQ QTPVIGNFFL LLATLIFLAV DGHLLMIRML VASFETLPIS NQGLTLTSYR ALAEWGSYMF GAALTMSLSA IIALLLVNLS FGVMTRAAPQ LNIFSIGFPI TMIGGLLILW LTLTPVMAHF EEVWASAQLL LCDILGLQCQ ADGIL
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