Gene Shewmr4_1294 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1294 
SymbolfliR 
ID4251227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1500119 
End bp1500916 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content49% 
IMG OID638117879 
Productflagellar biosynthesis protein FliR 
Protein accessionYP_733430 
Protein GI113969637 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1684] Flagellar biosynthesis pathway, component FliR 
TIGRFAM ID[TIGR01400] flagellar biosynthetic protein FliR 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.755718 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCTGC TGCTCGACAC CTTAATGCAA ACCATCGCCT CTTATATGTG GCCATTGTTT 
CGCGTGACCA GCATGCTGAT GGTCATGGTG GTGTTTGGTG CTACGACAAC CCCGACTCGA
GTCCGTTTAC TCTTAGCGGT GGCTATCACT CTGGCCATTG CGCCAGTATT ACCGCCCGTT
AAGGATGCGG AGCTCTTTTC CTTAAGCGCT GTTTTTATTA CTGCTCAGCA AATTATTATT
GGTGTCGCCA TGGGCTTTGT AACCCAAATG GTGATGCAAA CCTTTGTGTT AACGGGCCAG
ATCATCGGTA TGCAAACCAG CTTAGGTTTT GCCTCTATGG TCGACCCCGG TTCTGGTCAA
CAAACACCAG TGATAGGCAA CTTCTTTTTG TTGCTCGCGA CGTTGATTTT TCTCGCCGTC
GATGGACACC TGTTGATGAT CCGTATGTTA GTCGCCAGTT TCGAGACCTT ACCGATTTCG
AATCAAGGGT TAACGTTGAC GAGTTATCGC GCGCTAGCGG AATGGGGCTC CTATATGTTT
GGCGCGGCAC TGACCATGTC GCTCTCGGCG ATTATTGCCT TGCTGCTCGT TAACTTATCC
TTTGGGGTTA TGACTCGCGC CGCGCCGCAG CTGAACATCT TCTCGATAGG TTTCCCAATC
ACTATGATTG GTGGACTGCT CATTTTATGG TTAACCTTGA CCCCTGTAAT GGCTCATTTC
GAAGAGGTTT GGGCGTCGGC ACAGCTTTTG CTATGTGATA TTTTAGGGCT TCAGTGTCAA
GCCGACGGCA TACTCTAA
 
Protein sequence
MELLLDTLMQ TIASYMWPLF RVTSMLMVMV VFGATTTPTR VRLLLAVAIT LAIAPVLPPV 
KDAELFSLSA VFITAQQIII GVAMGFVTQM VMQTFVLTGQ IIGMQTSLGF ASMVDPGSGQ
QTPVIGNFFL LLATLIFLAV DGHLLMIRML VASFETLPIS NQGLTLTSYR ALAEWGSYMF
GAALTMSLSA IIALLLVNLS FGVMTRAAPQ LNIFSIGFPI TMIGGLLILW LTLTPVMAHF
EEVWASAQLL LCDILGLQCQ ADGIL