Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1282 |
Symbol | fliF |
ID | 4251215 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1489245 |
End bp | 1490930 |
Gene Length | 1686 bp |
Protein Length | 561 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638117867 |
Product | flagellar MS-ring protein |
Protein accession | YP_733418 |
Protein GI | 113969625 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTGTCG GATCAAACGC CGGCGCAGTG GACCAAGGGG TCCAACAGGA AAATAAATCC GGCGTGCTGG GAAGTCTCGG TGGCGTCGAT ATGATGCGTC AAATCACCAT GATTTTAGCC CTCGCCATTT GTTTGGCGTT AGCCGTGTTC GTCATGATCT GGGCACAGGA GCCTGAGTAC CGTCCATTGG GTAAAATGGA AACTCAGGAA ATGGTGCAAG TGCTCGACGT ACTTGATAAA AATAAGATCA AGTATCAAAT CGATGTTGAC GTCGTTAAGG TACCCGAAGA CAAATATCAA GAAGTTAAAA TGATGCTGAG CCGTGCGGGT ATTGATAGTG CCGCGGCCTC AAGCAAAGAT TTTCTCACCC AAGACAGTGG TTTTGGCGTG AGCCAAAGAA TGGAACAGGC TCGCCTCAAG CACAGCCAAG AAGAAAACCT CGCCCGCGCA ATTGAACAAC TGCAAAGTGT TAGCCGCGCC AAAGTGATTT TAGCCCTACC CAAAGAAAAC GTGTTTGCTC GCAACACTGC GCAGCCAAGT GCGACCGTTG TGATCAACAC TCGCCGTGGT GGTTTAGGCC AAGGCGAGGT CGATGCTATT GTGGATATCG TCGCTTCCGC CGTTCAGGGC TTAGAGCCAT CTCGCGTGAC AGTTACAGAT TCTAACGGCC GTTTACTGAA CTCGGGTAGC CAAGATGGCG TATCTGCTAG GGCGCGTCGT GAGCTTGAGT TAGTTCAACA GAAAGAAGCC GAATACCGCA CTAAAATTGA CTCTATTTTA TCGCCCATTC TCGGGCCTGA TAACTTCACT TCTCAAGTAG ATGTGAGCAT GGATTTCACT GCGGTCGAGC AAACCGCTAA GCGCTTCAAC CCCGACTTAC CGTCGCTGCG TAGCGAAATG ACGGTCGAGA ATAATTCGAC TGGCGGTTCA ACTGGCGGCA TTCCTGGTGC CTTATCGAAT CAACCCCCAA TGGAATCTAA TATTCCGCAG GAAGCAGATA AAGCGACGGA AAGTGTTACT GCTGGTAACT CCCACCGCGA AGCGACCCGT AATTTTGAAC TCGATACCAC CATCAGCCAT ACCCGTCAGC AAATTGGCGT GGTGCGCCGC GTGAGTGTGT CGGTTGCGGT GGACTTTAAA CCGGGGGCGG CTGGGGAAAA TGGCCAAGTG GCGCGCGTTG CCCGTACCGA GCAGGAGCTA ACCAATATTC GCCGTTTACT GGAAGGCGCG GTAGGCTTTA GCGCGCAGCG TGGTGATGTG CTGGAGGTGG TTACTGTTCC CTTTATGGAT CAATTGGTTG AAGATGTACC TGCGCCTGAG CTTTGGGAGC AACCTTGGTT CTGGCGTGCG GTGAAGTTAG GCGTTGGCGC TTTGGTTATC TTAGTGCTGA TCCTTGCTGT AGTACGTCCA ATGCTGAAAC GCTTAATCTA CCCAGATAAT GTGAACATGC CAGAGGATTC AAGACTCGGT AATGAGTTGG CGGAGATTGA AGATCAATAC GCCGCCGATA CCTTAGGGAT GCTCAATACC AAAGAAGCAG AGTATAGTTA TGCCGACGAT GGCTCAATTC TTATCCCTAA TCTGCATAAA GATGATGATA TGATTAAAGC TATCCGTGCG CTTGTGGCCA ATGAGCCCGA GCTTTCTACC CAAGTCGTGA AAAACTGGTT ACAAGACAAT GGCTGA
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Protein sequence | MIVGSNAGAV DQGVQQENKS GVLGSLGGVD MMRQITMILA LAICLALAVF VMIWAQEPEY RPLGKMETQE MVQVLDVLDK NKIKYQIDVD VVKVPEDKYQ EVKMMLSRAG IDSAAASSKD FLTQDSGFGV SQRMEQARLK HSQEENLARA IEQLQSVSRA KVILALPKEN VFARNTAQPS ATVVINTRRG GLGQGEVDAI VDIVASAVQG LEPSRVTVTD SNGRLLNSGS QDGVSARARR ELELVQQKEA EYRTKIDSIL SPILGPDNFT SQVDVSMDFT AVEQTAKRFN PDLPSLRSEM TVENNSTGGS TGGIPGALSN QPPMESNIPQ EADKATESVT AGNSHREATR NFELDTTISH TRQQIGVVRR VSVSVAVDFK PGAAGENGQV ARVARTEQEL TNIRRLLEGA VGFSAQRGDV LEVVTVPFMD QLVEDVPAPE LWEQPWFWRA VKLGVGALVI LVLILAVVRP MLKRLIYPDN VNMPEDSRLG NELAEIEDQY AADTLGMLNT KEAEYSYADD GSILIPNLHK DDDMIKAIRA LVANEPELST QVVKNWLQDN G
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