Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1205 |
Symbol | |
ID | 4251244 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1405375 |
End bp | 1406202 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638117790 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_733342 |
Protein GI | 113969549 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00184527 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAACC TCGAAGGTTT ATTAAAGCAG GCACCGGATC TAGTCATGAC CTATGGCTTA AAGATCTTAT TTGCACTGAT TATTTTCTTT GTCGGTAAAT ATTTTTCTGG CGTCGCACAA AGGTTAGTAC GCAAGTTACT TAACAGCCGC AAGATTGATC CAACAGTGGT GTCTTTTGTG GCTAACTTAG CCTGGGCCGT GGTGTTTGTG TTCACCATTA TCGCTACCTT AGGCCAAATC GGCGTACAAA CCGCCTCTCT AGTCGCGGTT ATCGGTGCTG CTGGTTTAGC CGTAGGTTTA GCACTGCAAG GTTCTCTGTC TAACTTTGCC TCAGGCGTAT TAATGGTGCT ATTCCGTCCA TGCCGTGTAG GTGATTATAT TGAAGCGGCG GGTATTGCTG GTACTGTTGA TGAAATCACC ATTTTCTCAA CCAAATTACG CACACCAGAT AATAAAGTGA TTGTGGCGCC AAACTCCTCA ATCATGAATG GCACTATCAC AAACTACTCT GCGTTAGAAA ATCGTCGTAT CGATTTAGTA GTTGGCGTGT CTTATTCAGC GGATATTGCT CAAACCAAAA AAGTATTAAC AGAGATTTTA GATAACAACC AATACGTACT GAAAGAGCCA GGTTACACCG TAGGTCTTTC TGAGTTGGCG AATTCTTCAA TCAACTTTGT GGTTCGTCCT TGGGTTAAAA CTGCCGATTA CTGGACAGCA CGTTTCGAAA TTTTAGAACA AATCAAAAAT GCACTCGATG CAGCCAACAT TGAAATTCCA TTCCCACAAA TGGATATTCA TGTGAAGCAA CTGCCAGAGA GCAAATAA
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Protein sequence | MENLEGLLKQ APDLVMTYGL KILFALIIFF VGKYFSGVAQ RLVRKLLNSR KIDPTVVSFV ANLAWAVVFV FTIIATLGQI GVQTASLVAV IGAAGLAVGL ALQGSLSNFA SGVLMVLFRP CRVGDYIEAA GIAGTVDEIT IFSTKLRTPD NKVIVAPNSS IMNGTITNYS ALENRRIDLV VGVSYSADIA QTKKVLTEIL DNNQYVLKEP GYTVGLSELA NSSINFVVRP WVKTADYWTA RFEILEQIKN ALDAANIEIP FPQMDIHVKQ LPESK
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