| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1165 |
|---|
| Symbol | |
|---|
| ID | 4251449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1371647 |
|---|
| End bp | 1373128 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638117746 |
|---|
| Product | deoxyribodipyrimidine photo-lyase type I |
|---|
| Protein accession | YP_733302 |
|---|
| Protein GI | 113969509 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0415] Deoxyribodipyrimidine photolyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATA ATCAACCCCA AGCGGCAAAG CACACGTTGA TGTGGTTTCG CCAGGATCTG
CGCCTAACGG ATAACCAAGC ACTGACGGCA GCCTGTGATT GGGTGCGGCA AGTGCCTGGC
GCAAAACTCA GGGCGATTTA TATTGCGACT CCGAGCCAAT GGCTCAGCCA CGATATGGCG
CCGATCCAGA TTGATTTTAT CCAGCGGCAT GTGAATTTGC TCGCTCAAGG ACTCGCAAGC
CTAGGGATTG AATTTGAGCT TATTCAACTT GATAGCTTTA AAGAAGTGCC CGCCTTTTTA
GCGAGTTACT GTGAAAAGCT TGGAGTTGAG CGGGTGTTCG CGGGGCGAGA ACCCGAAATC
AACGAGCAAA AGCGCGACCA AGCCTGTCTC GATGTGGGTA TTCCCTTGGT GCTCAGCGAC
GAGCATTGCC TATTACCGCC GGGCACAGTG CTTAACTTAA GCGGTGATAT GTATAAGGTG
TTCACGCCCT TTAGCCGCAA GTGGCGAGAA GTTGCCGCCA AGCGCGCCAT TTTGCCGCTT
GCTGTACCTG CGCCGCTTGG CCCTATGTTA CCTGAACCAA AGCCAATCAG TTTTAAAGAA
CGTTTCCCAT TCACTAGCAA GCTAACCTCT AGCGAGCAAT GGGCGGCGGG AGAGGGGCAG
GCAAAACGTA TTCTTACCGC ATTTATTCAG CAAAAAGCCC AAGACTATAA ACAGGATAGG
GACTTTCCTG CTCTCGAGGG TACCAGTGTT ATCTCCCCTT ATTTGGCGCT GGGTGTGCTG
AGTCCAAGGC AATGTATTGC GGCGCTGCTT GGGCGTTTTC CCGAGGTAAT TGTCGATGAT
ACTAGCCCTG GGCGAACCTG GTTGAATGAG CTGATCTGGC GGGAGTTTTA TCGCCATTTG
TTAGTGGCTT TTCCAGATTT ATCCAAGGGG CATAACTTTA ATCGTCAGGC CGACCATGTG
CAGTGGCGCA ACAACCAAGC TGAGTTTTTG GCATGGTGCG AGGGCAAAAC GGGTTACCCG
ATTGTAGATG CGGCAATGCG CCAGCTTAAT CAAACTGGCT GGATGCACAA TCGACTGCGC
ATGGTGGTGG CGAGCTTTTT AACCAAACAC TTGCTTATCG ATTGGCGCTG GGGTGAACGT
TACTTCCGGC AGCATCTTAT CGACGGCGAT CTGGCGGCTA ATAACGGTGG CTGGCAATGG
TCGGCGGGCT GTGGCTGCGA TGCCCAGCCT TATTTCCGCA TTTTTAATCC TATCAGCCAG
AGCGAAAAGT TTGATCCAGA TGGCAGCTTT ATCCGTAAGT ACTTACCAGA GCTGGCATCT
TGGGGAATCA AGCGTTTGCA CCAACCCAAT ATGCAAAAAA CGCCTTCGTT ATTTGAGGTG
CCAACGCTGG AGTCTGACTC GGCTTATCCC TATGCAATTG TGGAGCACAA TGCGGCAAGG
GCGAGGGCGC TAGCGGTACT TGGGGTGCTG AAAAAGGCCT AG
|
|---|
| Protein sequence | MSDNQPQAAK HTLMWFRQDL RLTDNQALTA ACDWVRQVPG AKLRAIYIAT PSQWLSHDMA
PIQIDFIQRH VNLLAQGLAS LGIEFELIQL DSFKEVPAFL ASYCEKLGVE RVFAGREPEI
NEQKRDQACL DVGIPLVLSD EHCLLPPGTV LNLSGDMYKV FTPFSRKWRE VAAKRAILPL
AVPAPLGPML PEPKPISFKE RFPFTSKLTS SEQWAAGEGQ AKRILTAFIQ QKAQDYKQDR
DFPALEGTSV ISPYLALGVL SPRQCIAALL GRFPEVIVDD TSPGRTWLNE LIWREFYRHL
LVAFPDLSKG HNFNRQADHV QWRNNQAEFL AWCEGKTGYP IVDAAMRQLN QTGWMHNRLR
MVVASFLTKH LLIDWRWGER YFRQHLIDGD LAANNGGWQW SAGCGCDAQP YFRIFNPISQ
SEKFDPDGSF IRKYLPELAS WGIKRLHQPN MQKTPSLFEV PTLESDSAYP YAIVEHNAAR
ARALAVLGVL KKA
|
|---|
| |