Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1147 |
Symbol | |
ID | 4251815 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1348972 |
End bp | 1350654 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638117728 |
Product | PepSY-associated TM helix domain-containing protein |
Protein accession | YP_733284 |
Protein GI | 113969491 |
COG category | [S] Function unknown |
COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.366711 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGAAA CTTTTTTTAG AACCCTCTCC TGGCTGCACA CTTGGGCGGG TTTGCTCGTG TGCTGGGTAT TACTGCTGAT CTTTTTTGCT GGTAGCCTGA GTTATTTCCG CCATGAAATG AGCCTGTGGG CCGAGCCAGA ACTCCACCGC GGCGCCTTTC AAGACTATCA AACGAATCAA GTAGCGACTC AGCTTGACCA AGGTCAAGAC TACATTGAAG CGCATTCCGC GGCGGCAACC CAACGCTGGT TAATCAATTT CCCAACCGAT AGAAGCCCCA TGCTGAGCTT TGCGTGGCAA CTGCCGCCTG AAAAGGGTCA ACGCCGAGGC AAAATCGAGC AGCATGTCAC CAAGGCCGAT GGCAGTGGCA TGATCACCGA TGTCCGCGAC AGCCGCGGCG GTGACTTCTT CTACCGTTTA CATTTCGACC TACACTACAT GCCAGCCATT ACGGCGCGCT ACATTGTGGG TGTCTGCACT ATGTTTATGT TAATTGCCCT TATCAGCGGC ATCGTTATCC ATAAGCGTAT CTTTAAAGAC TTGTTTAGCT TTCGTCAGAA CAAGGGCGCT CGCTCTTGGT TAGATGCCCA TAATGTCAGC TCTGTGATTG CCCTGCCCTA CCATTTAATG ATCACCTATA CTGGCCTCAT CACTTTAATG CTGATCTATA TCCCATGGAC GGTAAGCACA GCTTATCCTG AGGATAATCA AGCCTTTTTA AAAGAACTCA ATCCGGCGAG ACAAACAGAA AAAGCCTCGG GCATTCAGGC AGAGCAAGTG CGCTTAAGCC AACTGTTGCC CCAAGTTCAG GCAGAATGGG GCGATGCACC TATCAAGCAG GTGATTGTTT CCTATCCGAA AGATCAAAAT AGCCAAGTGA CCTTCTACCA AAATACCGGT AAAGACGTCA CCGACGAATC AACACTCCTA GTGTTTAACG GTGTTACGGG TGAACTCAAG TACGCCAGCC CCCATGAGAT GTCGGCAACC GTCGTGACCT ACGACACTAT GATGTCGCTG CACACCGCGC GTTTTGCCGC GCCACTGCTG CGTATTTTGT TCTTCTTCTG TGGCTTACTC GGCTGCGCCA TGGTCGCAAC GGGCACCTTA ATGTGGGCGA TTCGTCTACG CCAGAAGCAG CAAAAGGCAA TCGATAAAGG CGAGAAAGCG AGTCGTGGTC TGCGCTTAGT CGAAGGATTA AACTTCATGT TTATCTTAGG CTTGCCCTTA GGCGCGGCGG CATTTTTCTA TGCAAACCGC CTACTACCAA CGGATTTTGC CGCCCGCTCA GCCTGGGAAG TACATAGCTT CTTTATCACT TTAGGAGCGA TGGGCGTATG GGCATTTTTC GGTCGAAGCC GACGCCATTG GCAATTCGCC TTGATGCTTA TCGGAGCGCT TTATTGCGCA CTGCCGCTGT TAAATGCGGC CACGTCTCCG AGCCACTTAA TTGATAATAT CCGCAGCCAA CAATGGGCAC TGGTTGGGTT TGATGTGCTC GCGCTGTTAC TGGGTTGTGC CATGCTTTTT GCGAGCACTC GACTCTCGGC CGTGGTGAAA ACATTGCAAA AGCCGAGTCG AAAAAATACC ACAGCAGTTG AAAAAGTCAG GAGAAAACAA CCTGAACCGA GTTATGCTAA CGAACTTGCC TCGTCGTCTC CCTTGGAGGA AGCAAAATCA TGA
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Protein sequence | MKETFFRTLS WLHTWAGLLV CWVLLLIFFA GSLSYFRHEM SLWAEPELHR GAFQDYQTNQ VATQLDQGQD YIEAHSAAAT QRWLINFPTD RSPMLSFAWQ LPPEKGQRRG KIEQHVTKAD GSGMITDVRD SRGGDFFYRL HFDLHYMPAI TARYIVGVCT MFMLIALISG IVIHKRIFKD LFSFRQNKGA RSWLDAHNVS SVIALPYHLM ITYTGLITLM LIYIPWTVST AYPEDNQAFL KELNPARQTE KASGIQAEQV RLSQLLPQVQ AEWGDAPIKQ VIVSYPKDQN SQVTFYQNTG KDVTDESTLL VFNGVTGELK YASPHEMSAT VVTYDTMMSL HTARFAAPLL RILFFFCGLL GCAMVATGTL MWAIRLRQKQ QKAIDKGEKA SRGLRLVEGL NFMFILGLPL GAAAFFYANR LLPTDFAARS AWEVHSFFIT LGAMGVWAFF GRSRRHWQFA LMLIGALYCA LPLLNAATSP SHLIDNIRSQ QWALVGFDVL ALLLGCAMLF ASTRLSAVVK TLQKPSRKNT TAVEKVRRKQ PEPSYANELA SSSPLEEAKS
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