Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1124 |
Symbol | |
ID | 4251792 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1318235 |
End bp | 1320820 |
Gene Length | 2586 bp |
Protein Length | 861 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638117697 |
Product | DNA mismatch repair protein MutS |
Protein accession | YP_733261 |
Protein GI | 113969468 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCCTA TAGATACCGA TGATTTAGAA AAACATACCC CTATGATGCG TCAATATTTG ACCATGAAAG CAGAGCATCA CGACATGCTG CTGTTTTATC GTATGGGTGA CTTCTATGAA CTCTTCTATG ATGACGCAAA ACGCGCCTCT GAATTATTGG GCATTTCCCT TACAGCTCGC GGCAAAAGTG GTGGCGATCC GATCCCGATG GCGGGAATTC CTTACCATGC GGTTGAAGGC TATCTGGCCA AATTGGTTCA AATTGGTCAA TCGGTCGCGA TCTGTGAGCA GATAGGCGAC CCCGCCACCT CAAAAGGCCC AGTTGAGCGA AAAGTGGTGC GTATCGTCAC CCCTGGTACC TTGACCGACG AAGCCCTATT GCAAGAGAGA CAGGACAATC TGTTAGCCGC GGTTTACCAA GGCAAAGTTG GTTTTGGCTA CGCTACCCTC GATGTGTCTT CCGGCCGCTT CGTGATTGCT GAATTAGAGA CAAAAGAGTC CCTCGAAGCC GAACTGCAAC GTACCAATCC GGTCGAAATT CTCTATAGCG AAGATTTTGG CGCGATGGAG CTATTGCATC ATTTTAAAGG CAAGCGTCGC CGCCCAGAGT GGGAGTTTGA TTACGATACC AGCATCAAAC TGCTGCTGGC ACAATTTGGC ACTAAGGATT TGCACGGCTT TGGGATTACC GATGCCAGGC TTTCGCTACA AGCGGCTGGC TGCTTAATGC AATATGTGAA AGACACCCAG CGCACCGCCC TGCCACATAT CAATGCCATT ACCCGTTTCA ATCAAACCGA TACGATTGTC TTGGATGCGG CAACGCGCCG TAACCTCGAG CTGACACAAA ATTTGAGTGG TGGTCGAGAT AACACCTTAG CAGCCGTACT CGACAATACC GCCACAGCCA TGGGCAGCCG GATGTTGCAA CGCTGGATCC ATCAGCCGCT AAGGGACCAT GCCCAGATTT TTGCTCGCCA AACGGCCGTG AATGAATTGC TCGAGACCAC TGCCCATGAG TCATTGCATG AGCAGCTTAA AGCCCTAGGC GATATCGAAC GTATTATGGC AAGGCTGGCG CTGCGTACCG CTCGTCCAAG GGATTTTGCC CGCCTACGCC AAGCATTAAA CCTATTACCT AAGTTGCAGC AATCACTCGC GCAATTAAGT GCGCCCCATA CGGTGAAACT AGGCCAACTC TTAGGTGAGT TTCCCGAAGA GCAACAACTG CTTGAGCGCG CCATTGTCGA TAACCCGCCG ATGCTTATCC GTGACGGCGG CGTGATCCGT GAAGGCTACA ATGCCGAGTT AGATGAATGG CGAGGTTTAA GTGAAGGAGC CACTGATTAT CTAGTTCAGC TCGAGGCACG GGAAAAAGAG CGTACAGGCA TTGCCACGTT GAAGGTTGGC TACAACCGAG TGCATGGCTA CTACATCGAG GTCAGTCGCC TGCAATCGCA GCAAGTGCCG TTAAATTACC AGCGCCGTCA AACCCTTAAG AATATGGAGC GTTACATCAC GCCCGAGCTT AAGGAATACG AAGAAAAAGT GCTGTCGAGC CAAGGTAAGG CGCTCGCCCT TGAAAAACAA CTATGGGACG AATTGTTTGA TTTAATCCTC CCCAAGTTGC ATGAGCTACA AGCCTTCGCC AGAGCGGCAG CCGAGCTCGA TGTGCTGAGT AACTTTGCCG AACGTGCCGA AACCTTAGGG TATACCTGCC CAGAACTGAG CAGCGAAATC GGGGTAAAAA TCGAAGCGGG TCGCCACCCA GTGGTTGAAC GTGTGAGTCA AACGCCTTTT ATCGCCAACC CTGTCACCCT GTACAATCAA CGCCGGATGT TGATTGTTAC AGGTCCAAAC ATGGGCGGTA AATCGACCTA CATGCGCCAA GTGGCGCTTA TCACCCTAAT GGCACATATT GGCTGCTTTG TGCCAGCAGA TCGCGCCATC ATTGGCCCTA TCGATCGGAT TTTTACTCGG ATTGGCGCCT CAGACGATCT CGCCTCTGGT CGCTCAACCT TTATGGTGGA AATGACTGAA ACGGCAAATA TTCTCCATAA TGCAACCGCG CAAAGTTTAG TCTTGATGGA TGAAATTGGC CGTGGCACCT CGACCTACGA TGGCCTGTCA TTAGCCTGGT CTGCGGCTGA ATATTTAGCA CAGCAAGTCG GCGCAATGAC GCTGTTTGCG ACCCATTATT TCGAGTTAAC ACAATTACCG GAACTCATGG CTGGCGTCTA TAACGTGCAC CTCGATGCAA TTGAACACGA AGACACCATC GCCTTTATGC ATGCAGTGCA AGAAGGTGCG GCCAGTAAGA GTTATGGTTT GCAGGTTGCG GCCCTTGCCG GGGTGCCTGC TCGGGTGATT AAGGCGGCAA AACACAAGTT ACATCAACTT GAGAGCCGCG ATCATCAAGT AGAAGGTGTT AATGTTAACG GCACTAGGGC ACCGATCCAA ACCCTGCTCG CTCTGCCTGA GCCGGTGGAG AATCCCGCTG TCAGCAAATT AAAAGCCATC AATCCCGATA ACCTGACCCC AAAACAGGCG CTGGATTTAC TCTACGAGCT AAAACGCTTG AGTTAA
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Protein sequence | MNPIDTDDLE KHTPMMRQYL TMKAEHHDML LFYRMGDFYE LFYDDAKRAS ELLGISLTAR GKSGGDPIPM AGIPYHAVEG YLAKLVQIGQ SVAICEQIGD PATSKGPVER KVVRIVTPGT LTDEALLQER QDNLLAAVYQ GKVGFGYATL DVSSGRFVIA ELETKESLEA ELQRTNPVEI LYSEDFGAME LLHHFKGKRR RPEWEFDYDT SIKLLLAQFG TKDLHGFGIT DARLSLQAAG CLMQYVKDTQ RTALPHINAI TRFNQTDTIV LDAATRRNLE LTQNLSGGRD NTLAAVLDNT ATAMGSRMLQ RWIHQPLRDH AQIFARQTAV NELLETTAHE SLHEQLKALG DIERIMARLA LRTARPRDFA RLRQALNLLP KLQQSLAQLS APHTVKLGQL LGEFPEEQQL LERAIVDNPP MLIRDGGVIR EGYNAELDEW RGLSEGATDY LVQLEAREKE RTGIATLKVG YNRVHGYYIE VSRLQSQQVP LNYQRRQTLK NMERYITPEL KEYEEKVLSS QGKALALEKQ LWDELFDLIL PKLHELQAFA RAAAELDVLS NFAERAETLG YTCPELSSEI GVKIEAGRHP VVERVSQTPF IANPVTLYNQ RRMLIVTGPN MGGKSTYMRQ VALITLMAHI GCFVPADRAI IGPIDRIFTR IGASDDLASG RSTFMVEMTE TANILHNATA QSLVLMDEIG RGTSTYDGLS LAWSAAEYLA QQVGAMTLFA THYFELTQLP ELMAGVYNVH LDAIEHEDTI AFMHAVQEGA ASKSYGLQVA ALAGVPARVI KAAKHKLHQL ESRDHQVEGV NVNGTRAPIQ TLLALPEPVE NPAVSKLKAI NPDNLTPKQA LDLLYELKRL S
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