| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1123 |
|---|
| Symbol | |
|---|
| ID | 4251791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1317114 |
|---|
| End bp | 1318094 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638117696 |
|---|
| Product | RNA polymerase, sigma 28 subunit |
|---|
| Protein accession | YP_733260 |
|---|
| Protein GI | 113969467 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCA TAAATAGCAC TGCCGCAGAA GAACTAGTAG ATTTTTCCGT AGATACCGCA
GAGTTTGATC TCGATAAAGA GGATATTGCC GCCGATTTAG TTCAAGAACT AGGACTCGAA
CAACAGGTTC AAGACGACCT GCAAAAAAAT CTTGATGCCA CCCAGCTCTA TTTAGGTGAA
ATAGGGTTTT CCCCACTGCT TAGCGCAGAA GAAGAAGTTT ACTTTTCCCG TAAAGCCTTA
AAAGGCTGCG AAAAATCCCG TAATCGCATG ATTGAAAGTA ACCTACGACT CGTGGTTAAA
ATTGCCCGTC GTTACAATAA TCGTGGCCTA GCGCTGCTGG ATTTAATCGA AGAGGGTAAT
CTTGGCTTGA TCCGTGCGGT GGAAAAATTC GACCCAGAAA GAGGTTTCCG TTTCTCAACC
TATGCGACTT GGTGGATCAG ACAAACGATC GAACGTGCGA TTATGAATCA AACCCGCACG
ATTCGTTTGC CAATCCATGT GGTGAAAGAA CTCAACGTGT ATTTACGGAC GGCTCGGGAA
TTAGCGCAAA AACTTGACCA CGAACCTACG GCAGAAGAAA TTGCCGAGAA ACTGCAAGTA
TCCAGTGTTG ACGTCAGTCG TATGCTGAAG CTCAACGAGA AGATCACCTC TGTCGATATC
CCCTTAGGTG GCGATAACGA CAAGGCGTTA CTCGATGTGC TTGCCGATGA CGACAATGTA
GGCCCAGATT ACAAAGTACA AGACGAAGAC ATTTCAAACT CAGTGGTGAA ATGGCTCAAC
GAACTCAATA CCAAGCAAAG AGAAGTGTTA GCGCGCCGTT TTGGTTTATT AGGTTATGAA
CCCTCAACCC TTGAAGACGT AGGCGCAGAA ATTGGCCTCA CCCGTGAACG TGTTCGCCAA
ATTCAAGTGG AAGCCCTTAA ACGCCTACGT GATTTGCTGG GCGCTCAAGG TCTCTCTGTA
GAGGCACTAT TTAGAAACTA A
|
|---|
| Protein sequence | MSRINSTAAE ELVDFSVDTA EFDLDKEDIA ADLVQELGLE QQVQDDLQKN LDATQLYLGE
IGFSPLLSAE EEVYFSRKAL KGCEKSRNRM IESNLRLVVK IARRYNNRGL ALLDLIEEGN
LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE LNVYLRTARE
LAQKLDHEPT AEEIAEKLQV SSVDVSRMLK LNEKITSVDI PLGGDNDKAL LDVLADDDNV
GPDYKVQDED ISNSVVKWLN ELNTKQREVL ARRFGLLGYE PSTLEDVGAE IGLTRERVRQ
IQVEALKRLR DLLGAQGLSV EALFRN
|
|---|
| |