Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1066 |
Symbol | |
ID | 4250771 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1248105 |
End bp | 1249631 |
Gene Length | 1527 bp |
Protein Length | 508 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638117639 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_733203 |
Protein GI | 113969410 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTATTC TGGGATTTAT CGGTTTAGCA TTGGTTATTA TCTTGATAGC CGTGCTCTAT ATTTTACTTG CAAGATATCA GGCTCTGCGG CTACAGCAGC GATTTTTGGC GCAGTTATGC CCCCAGCTCG ATCAACAAAA GATTGAACGC CGCCCCCTTA ATATTCCTAT CGTGCCGCAG GAGTTTGCGC CCCTGTACCA CTCCTTAAAT GAGATGCTCG CAGCGCTGCC TGCGGGTATG GGCAAGGACA AACTCACTGG GCTGAATAAC CGTGTCGGAC TCAAGCGCTC ATTGACGGCT ATGATGCCTA TCACCCATGG CACCTTAGTG CTCATCGATA TCTATCGTTT TCGCTATGTG AATGATCTCT TTGGTTTTGT ATTTGGGGAT ATTCTGCTTA AACAGTTTGC CGATCGCTTA ACCAGCTTAA GTCTTAAACC TAAGTTGATT GCGCGTCTAA ACGGTGATGA GTTTTTCCTC TATTACGAGC AAAGTCTGTC CGAGGAGCAA TTGCTGCATT TACGTGGCCG TTTACAAGTT CCCTTTAAAA TTAAAGATAC GCCTGTGAGT GTGCGAATGC AGATTGGTTG TTTGCAATTG GCTGAGCACC ATACCGATGT GAGCCATATG CTCAGAAGGC TAGATCTCGC CCTTAAAAAG GCTCGTGCCA CTCGCAGCGC TATCGCCTGT TACAGTGAGA ATGACGATAT TCGTCAGTTG AGGGAGCTTA AGATTATCGA CAGTCTTCCC AGTGGCTTAC AGCGGAATCA TTTGTATATG GTGTACCAGC CTAAGCAGGA TATTCACACT GGAGCTTGCA CCCAAGTAGA GGCTCTAATT CGCTGGGAGC ATGAGGAACT CGGGTTTATT TCCCCCGCAG AATTCATTCC GCTGGCAGAA TGCGCCGGCA TGATAGATCT AGTGAGCAAT TGGGCGCTGG AGCAAGTGCT ACAGCAGCAG GTAAAGTGGC GTGTAGCAGG TATCTCTGTA TGTGTGGCGC TTAATCTCTC GACCCGTGAT CTCGATAGTG AAACCTTACC CAATGAGATA GCGACCCGCC TCGAACATTA TAAATTATCG CCAGAATGCT TAATGATTGA GATTACCGAA AGCACTCTGA TGGCGGATTT AAACAAGGCC GTGGATACCT TGGAACAAAT TCGTCGCCTT GGGGTGAAAT TGGCGATCGA TGATTTTGGC ACAGGCCATT CATCGCTGGC GTATTTAAAG CATTTACCCG CCAATGAAGT CAAAATCGAT AAAGCCTTTC TTCGGGATCT TGAGCCGAAT AAGCCCTCTG AATATATCCT TGAGGCCAGC ATCAATATCG CTAAAAAGCT CGGCTACGAG GTGACAGTAG AAGGTGTTGA AACGATCGAA GTCCATGATA TGTTGGTGAA TATGGGCGTC GATCGTATTC AAGGGATTGT TTATGCTAAG CCTATGCGGG CCGCAGAGCT TGAAATGAAC TGGGAGCAGC TTCGGCCAAC GCCTGAAATG CTCTGCGTGA ATGGTTCACA TCCCTAG
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Protein sequence | MVILGFIGLA LVIILIAVLY ILLARYQALR LQQRFLAQLC PQLDQQKIER RPLNIPIVPQ EFAPLYHSLN EMLAALPAGM GKDKLTGLNN RVGLKRSLTA MMPITHGTLV LIDIYRFRYV NDLFGFVFGD ILLKQFADRL TSLSLKPKLI ARLNGDEFFL YYEQSLSEEQ LLHLRGRLQV PFKIKDTPVS VRMQIGCLQL AEHHTDVSHM LRRLDLALKK ARATRSAIAC YSENDDIRQL RELKIIDSLP SGLQRNHLYM VYQPKQDIHT GACTQVEALI RWEHEELGFI SPAEFIPLAE CAGMIDLVSN WALEQVLQQQ VKWRVAGISV CVALNLSTRD LDSETLPNEI ATRLEHYKLS PECLMIEITE STLMADLNKA VDTLEQIRRL GVKLAIDDFG TGHSSLAYLK HLPANEVKID KAFLRDLEPN KPSEYILEAS INIAKKLGYE VTVEGVETIE VHDMLVNMGV DRIQGIVYAK PMRAAELEMN WEQLRPTPEM LCVNGSHP
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