| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1015 |
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| Symbol | secD |
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| ID | 4251053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1182612 |
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| End bp | 1184486 |
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| Gene Length | 1875 bp |
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| Protein Length | 624 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638117586 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_733152 |
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| Protein GI | 113969359 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.213021 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00788226 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATAAAA TTCAGAGTAA AAAGCTGTTA AATCACTATT CAGCTTGGAA ATACGTTGTG
CTTATTGTCA CGATTATCGT GATGTTATTT AGTGCCTTAC CGACTTGGTA TGGAGAAGAT
GCCGCCGTGC AGGTGGGCGC TAAAGCGGGG CTTAATTTAA CCCCCATCGA ACTGCGGGAT
AAATTAAAGG CGCAGGGCGT TGATGTTAAG CGTATCGAGG TTAAGCATGC CCAACATGGC
AACGCCAACA GCTCAGAAGA CGGGCAAACC CTTATTGTAC TCAATGATGA CAGCGAGCAA
ACCTTAGTGA AGACCTTAGT GTCATCCATG GTGAGTGAGC CGAAAGAGCT CACGCTCGCA
CTGGTGAGTG CAGCGCCAAG TTGGTTGCAA AATATGGGCT TTGAACCGAT TAAACTCGGG
CTCGACTTAC GCGGAGGAGT GCAATTTTTG CTGGATGTTG ATGTGCAGCC CGTCTATCAA
GCCCAGGCCG ATGCATTAGT CGAGTCCCTT AGGCAGTTTT TGCGTGAACA GCAAATTCGC
GGCGCCAGTG TGCGTATTGA TAGCACGCGC GATGACGCAG GGTTGCAAAT TGCAATTGCA
TTTAATGACG CGGCTGAATC CACCAATAAT GCGCGCTCAG CTATTCGCCA ATTTATGCAA
CAAAGCTACC CGACTTGGCA ATTAACCAAT GCGGATAATG GCTTAGTCGT ACAGCTCGCT
CAAGAAGAGC AAATCAAGTT ACGTAATTTA ACCGTGCAGC AAAACCTGCA AATTATGCGT
AGCCGGATTG AAGAGCTGGG CATCACTGAG GCTTTAGTAC AACGTCAGGG CGAACACCGT
ATCCGCATCG AGCTGCCCGG TGTACAAGAC CCCGCTGCCG CGAAAAACGT GATTGGTGCG
ACCGCTAGTC TGGCCTTTTT TGAAGTCAAA GAATCGGGTT CAGTGAATGC GCAGGTACTG
AAGGATAAAT CAGGCAATCC TGTTTATGTG GCACGCACGC CGATATTGGG CGGCGATCAT
ATTGTCGATG CCCGCGCCAA TATTGGCGAA ATGGGCATGG CCGAAGTGAA CATTCACCTC
GACCGTATCG GCGGCCAAAA AATGTCGGAG TTTTCCCGCG CCAATATCGA TAAGCCTATG
GCAACATCCT ACAGCGAATA TAGCCGGGAT GAGCAGGGCA AAGCTAAGCA AACCCAAGAG
ATCATCAGTG TCGCGACCAT TCAATCGCAG CTGGGAGATC GTTTCAGGAT CACTGGCGCA
GGCACCTATC AAGAGGCGCA GCAATTAGCC TTGTTGCTAC GCGCTGGCTC AATGACGGCG
CCTGTAACTA TTGTTGAAGA ACGTACCATT GGCCCAACCC TTGGCGCCGA AAACATTCAA
AACGGCTTTG CAGCGCTCGG CCTTGGTATG GGAATTACCT TGCTGTTTAT GGCGCTCTGG
TATCGCCGTC TCGGTTGGGT GGCCAACGTG GCCTTGATTG CCAACATGGT GATCCTCTTT
GGTTTGCTGG CACTGATCCC CGGCGCAGTA TTGACCTTAC CCGGCATTGC CGGTCTGGTG
CTGACGGTTG GTATGGCGGT CGATACCAAC GTACTGATCT TCGAGCGGAT TAAAGACAAG
TTGAAAGAGG GGCGCAGCTT TGCCCTGGCG ATTGACACTG GCTTTGACAG TGCGTTCTCA
ACCATTTTCG ACGCTAACTT CACCACTATG ATCACTGCGG TTGTGCTCTA TTCCATTGGT
AATGGCCCCA TCCAAGGTTT TGCCTTGACC TTAGGTTTAG GTCTGTTGAC CAGTATGTTT
ACCGGTATTT TTGCCTCAAG AGCCTTAATC AACCTAGTGT ATGGGCGTGA TGCGCGCCGC
CATGTGAGGG TATAA
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| Protein sequence | MDKIQSKKLL NHYSAWKYVV LIVTIIVMLF SALPTWYGED AAVQVGAKAG LNLTPIELRD
KLKAQGVDVK RIEVKHAQHG NANSSEDGQT LIVLNDDSEQ TLVKTLVSSM VSEPKELTLA
LVSAAPSWLQ NMGFEPIKLG LDLRGGVQFL LDVDVQPVYQ AQADALVESL RQFLREQQIR
GASVRIDSTR DDAGLQIAIA FNDAAESTNN ARSAIRQFMQ QSYPTWQLTN ADNGLVVQLA
QEEQIKLRNL TVQQNLQIMR SRIEELGITE ALVQRQGEHR IRIELPGVQD PAAAKNVIGA
TASLAFFEVK ESGSVNAQVL KDKSGNPVYV ARTPILGGDH IVDARANIGE MGMAEVNIHL
DRIGGQKMSE FSRANIDKPM ATSYSEYSRD EQGKAKQTQE IISVATIQSQ LGDRFRITGA
GTYQEAQQLA LLLRAGSMTA PVTIVEERTI GPTLGAENIQ NGFAALGLGM GITLLFMALW
YRRLGWVANV ALIANMVILF GLLALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK
LKEGRSFALA IDTGFDSAFS TIFDANFTTM ITAVVLYSIG NGPIQGFALT LGLGLLTSMF
TGIFASRALI NLVYGRDARR HVRV
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