| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0838 |
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| Symbol | metH |
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| ID | 4251978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 989734 |
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| End bp | 993468 |
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| Gene Length | 3735 bp |
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| Protein Length | 1244 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638117401 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_732975 |
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| Protein GI | 113969182 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATAT CTCTCCATCG AGCCAGCCAA ACACTGGCAG ACATTCGCAA CCAGTTGTCA
AAGCGCATTC TGATTTTAGA CGGCGCTATG GGCACTATGA TCCAAGGCTA CAAGCTGGAA
GAAGCCGATT ACCGTGGCGA GCGTTTCAAG GATTGGCATA CCGACGTTAA GGGCAATAAC
GATTTGTTAG TGCTCACGCA GCCACACATC ATCAAACAAA TTCACATCGA CTACCTATTA
GCCGGTTCCG ATATTATTGA AACCAACACC TTTAACGCCA CCACTATCGC CATGGCCGAC
TACGACATGC AGTCACTGTC CGCCGAAATT AACCGTGAAG GTGCGCGCCT CGCCCGTGAG
GCCTGTGACG AAATCGAAAA GGCCACGGGG AAACCCCGTT ATGTTGCCGG TGTGTTAGGG
CCCACTAACC GCACTTGCTC TATCAGTCCC GATGTTAACG ATCCCGGATA TCGCAATATC
CACTTCGATG AGTTAGTAAC CGCTTACTGC GAATCGACCC GCGCCTTAAT TGAGGGCGGC
GCCGATATCA TTATGGTCGA GACCATCTTC GATACCTTAA ACGCTAAGGC CGCCTTATTT
GCTATCGAAA CCGTGTTCGA TGAACTCTTT GGGGCAAATT CGCCAGCACG TTTGCCTGTA
ATGATCTCTG GCACTATTAC CGATGCCTCG GGCCGAACCC TGACCGGACA AACCACCGAA
GCCTTTTATA ACTCCCTTCG CCATATCAAG CCCTTGTCCA TCGGCCTTAA CTGTGCCCTC
GGCCCTAAGG AGCTGCGCCC TTACGTCGAA GAACTGTCTC GCATCGCCGA ATGTTATGTC
TCGGCGCACC CTAACGCGGG TCTACCAAAC GAGTTTGGCG GTTACGATGA AACCCCAGAG
GATATGGCGA GCGTTATCCA AGAATGGGCC CGTGAAGGCA TGCTCAACAT TATCGGCGGC
TGCTGTGGTA GCACGCCCGA GCATATTAAA GTCATTCGCG AAGCCGTGGA GCCGTTTGCG
CCACGGGTAT TACCCGAGAT CCCAGTCGCC TGCCGTTTAT CGGGTTTGGA ACCGCTCACT
ATCGACGCCC AAACCCTGTT TGTGAACGTG GGCGAACGTA CCAACGTGAC TGGCTCAGCC
AAGTTTTTAA AACTGATCAA AGAAGGCAAG TTCGAGCAGG CGCTCGATGT CGCCCGTGAA
CAGGTAGAAA GCGGCGCGCA GATCATCGAC ATCAACATGG ACGAAGGCAT GCTCGATGGT
GTGGAGGTAA TGCATAAGTT CTTAAATCTT ATCGCCTCTG AGCCGGATAT CAGCCGTGTG
CCGATTATGA TCGACTCCTC AAAGTGGGAG GTGATTGAAG CGGGCCTCAA ATGTATTCAA
GGCAAGGGAA TCGTCAACTC TATCTCCTTG AAGGAAGGCG AAGAAAAGTT TATCGAGCAG
GCAACCCTAG TGAAACGCTA CGGCGCCGCG GCCATTATTA TGGCGTTCGA CGAGCAAGGT
CAGGCCGACA CTAAGGCGCG CAAAGTCGAG ATCTGTACCC GCGCCTATCG CGTGCTGGTC
GATAAGGTCG GCTTTCCGCC CGAAGACATT ATCTTCGACC CAAATATTTT CGCCATTGCC
ACGGGTATCG ATGAGCACGA TAACTATGCC GTCGATTTTA TTGAAGCCAT TAAAGAGATT
AAGGCCACCC TGCCCCACGC GATGATTTCG GGCGGTGTGT CGAACGTGTC GTTCTCCTTC
CGCGGTAACA ACCCAGTGCG TGAGGCGATT CACGCGGTGT TCCTGTACCA CGCGATTAAA
GTCGGCATGG ACATGGGTAT CGTCAACGCG GGCCAATTAG CGATTTACGA TGATATCGAC
CCCGAGCTTA AGGATAAGGT CGAGAACGTC GTGCTCAACC TGCCTTGCCC AGTGGAAGGC
TCAAACAATA CCGAGCAATT GCTTGAGATT GCTGAAAAAT TCCGTGGCGA TGGCTCAAGT
GCCGCCAAGA AAGAAGACTT AGAATGGCGC TCATGGCCAG TTAATCAACG TCTCGCCCAT
GCGCTGGTCA AAGGCATCAC CGAATTTATC GACGAAGATA CTGAAGCGGC TCGCCAACTC
GCCTCTCGTC CGCTGGATGT GATTGAAGGC CCGCTGATGG ACGGTATGAA TATCGTCGGC
GACCTGTTTG GCTCGGGCAA AATGTTCCTG CCACAGGTGG TGAAGTCGGC GCGGGTGATG
AAAAAGGCTG TGGCCTACCT CAATCCCTTT ATCGAGCAAG AGAAGGTAGA AGGCCAATCT
AACGGCAGAA TTTTGATGGT CACGGTTAAG GGCGATGTGC ACGATATCGG CAAGAATATT
GTCGGCGTGG TGCTCGCCTG TAACGGCTTT GAGGTATTCG ATTTAGGCGT GATGGTGTCG
GTGGAGCGCA TTCTCGAGGC AGTGAAAGAG CACAATATCG ACATTATCGG CATGTCTGGG
CTTATCACCC CAAGCCTCGA TGAGATGGTG CACAATGTGA AAACCTTCCA CCGTGAAGGC
CTCACCATTC CAGCGATTAT CGGCGGCGCC ACCTGCTCGA AAATCCATAC TGCGGTGAAG
ATTGCGCCCC ATTATCCCCA TGGCGCGATT TACATTGCCG ACGCCTCCCG CGCCGTGCCT
ATGGTCAGCA AGCTAGTCAG CAATGAAACT CGCCAAGCGA CGATCGATGA GACCTACGCC
GAATACGAAG AGATGCGTGT TAAGCGTTTA TCGCAAACCA AGCGTAAGGA AATTGTCTCG
CTGGAGGCTG CCCGCGAAAA TCGCTGCCAG CACGACTGGG CAAACTACAC CCCGTTCAAG
CCTAACGTAC TGGGTCGCCA AGTATTTGAA GACTATCCAT TAACCGATTT AGTCGACCGT
ATCGACTGGA CGCCGTTCTT CCGCGCTTGG GAGCTGCACG GCCATTACCC CGAGATCTTA
ACCGACAACG TAGTGGGGGT TGAGGCGCAG AAACTGTTCG CCGATGGTCA GGCGATGCTT
AAAAAAATCA TTGATGAAAA ATGGCTCACC GCCAAGGGCG TGATTGGGTT ATTCCCCGCC
AATACCGTCG GCTTCGATGA TATTGAGCTC TATACCGACG AGACTCGCAC CGAGGTCGAA
ATGACCACCC ATCACCTGCG GATGCAGCTT GAGCGTGTGG GTAACGATAA CTTCTGTCTG
GCCGACTTTG TGGCGCCAAA AGACAGCGGC GTAGCCGACT ATATGGGCGG CTTTGCCGTG
ACCGCAGGCC ATGGTATCGA TGAGCATATC GCCCGCTTTG AGGCCAACCA CGATGACTAC
AATGCCATTA TGCTCAAGTG TTTAGCCGAC CGTTTAGCCG AAGCCTTTGC CGAGCGGATG
CACGAGCGCG TGCGTAAGGA ATTCTGGGGT TATGCCGCCG ATGAGCAGCT CGATAATGAA
GCCTTAATTC GTGAGAAATA CAAAGGGATC CGCCCCGCAC CGGGTTACCC CGCTTGCCCG
GATCACACCG AAAAAGGCCT GTTGTGGGAA CTGTTAAAGC CGAATGAAAC CATCGACTTA
AACATTACTG AAAGTTACGC CATGTTCCCG ACCGCCGCAG TATCCGGCTG GTACTTTGCC
CACCCGAAAT CTCGCTACTT TGGCGTGACC AATATTGGCC GCGATCAGGT GGAGGATTAC
GCGAAGCGTA AGGGGATGAC AGTCGCAGAG ACGGAGAAGT GGCTAGCGCC AGTGTTGGAT
TATGATCCTG AATAA
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| Protein sequence | MAISLHRASQ TLADIRNQLS KRILILDGAM GTMIQGYKLE EADYRGERFK DWHTDVKGNN
DLLVLTQPHI IKQIHIDYLL AGSDIIETNT FNATTIAMAD YDMQSLSAEI NREGARLARE
ACDEIEKATG KPRYVAGVLG PTNRTCSISP DVNDPGYRNI HFDELVTAYC ESTRALIEGG
ADIIMVETIF DTLNAKAALF AIETVFDELF GANSPARLPV MISGTITDAS GRTLTGQTTE
AFYNSLRHIK PLSIGLNCAL GPKELRPYVE ELSRIAECYV SAHPNAGLPN EFGGYDETPE
DMASVIQEWA REGMLNIIGG CCGSTPEHIK VIREAVEPFA PRVLPEIPVA CRLSGLEPLT
IDAQTLFVNV GERTNVTGSA KFLKLIKEGK FEQALDVARE QVESGAQIID INMDEGMLDG
VEVMHKFLNL IASEPDISRV PIMIDSSKWE VIEAGLKCIQ GKGIVNSISL KEGEEKFIEQ
ATLVKRYGAA AIIMAFDEQG QADTKARKVE ICTRAYRVLV DKVGFPPEDI IFDPNIFAIA
TGIDEHDNYA VDFIEAIKEI KATLPHAMIS GGVSNVSFSF RGNNPVREAI HAVFLYHAIK
VGMDMGIVNA GQLAIYDDID PELKDKVENV VLNLPCPVEG SNNTEQLLEI AEKFRGDGSS
AAKKEDLEWR SWPVNQRLAH ALVKGITEFI DEDTEAARQL ASRPLDVIEG PLMDGMNIVG
DLFGSGKMFL PQVVKSARVM KKAVAYLNPF IEQEKVEGQS NGRILMVTVK GDVHDIGKNI
VGVVLACNGF EVFDLGVMVS VERILEAVKE HNIDIIGMSG LITPSLDEMV HNVKTFHREG
LTIPAIIGGA TCSKIHTAVK IAPHYPHGAI YIADASRAVP MVSKLVSNET RQATIDETYA
EYEEMRVKRL SQTKRKEIVS LEAARENRCQ HDWANYTPFK PNVLGRQVFE DYPLTDLVDR
IDWTPFFRAW ELHGHYPEIL TDNVVGVEAQ KLFADGQAML KKIIDEKWLT AKGVIGLFPA
NTVGFDDIEL YTDETRTEVE MTTHHLRMQL ERVGNDNFCL ADFVAPKDSG VADYMGGFAV
TAGHGIDEHI ARFEANHDDY NAIMLKCLAD RLAEAFAERM HERVRKEFWG YAADEQLDNE
ALIREKYKGI RPAPGYPACP DHTEKGLLWE LLKPNETIDL NITESYAMFP TAAVSGWYFA
HPKSRYFGVT NIGRDQVEDY AKRKGMTVAE TEKWLAPVLD YDPE
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