| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0829 |
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| Symbol | |
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| ID | 4251969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 973516 |
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| End bp | 975078 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638117392 |
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| Product | rhomboid family protein |
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| Protein accession | YP_732966 |
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| Protein GI | 113969173 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.186643 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.166239 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGTGG CGTTAATCTT AAAAAAACTC CAGTTGATCT ATGTGCCCTT TATACTGCTC
TGCCTGCTAT TTGTCTCAGG TTACAGCTTG CTCCATTGGT TGTTGATTAT CGAGTTCCAA
CTACTGAGCA TTGACGAATC GATTATCAAT TTTTGGTTGC CGCTGATATT GCCTTGGCCC
TTACTGTTTT TCTACTTAAG ACCTCGGCTC AAGTTATTCC GCTTTACCAA GAGTAATAGC
CGTTTTATCT ATTTTGTGAT TGCCGTGCTG TTGCTGGCCG TGCCCACTAT CGTGGCGCAG
GAATACCTTA ATAGCGCAAC GGGCAAGTTG ACTCAACTCG AGTCCATCAA TGCACTATTG
CATCAGCCGC AGACCAAGTA TTACCAATTA AATCAGTTTT ATATCGACAA AAAACATATA
GGGGTGCAGC GCAATATTGA GCCCATAGGC AAGGGCAACA GTGAGCTGCG CATGAGCCTG
TATATTGCGA TGCCAATTTT CGCTAAACGT AACGAGAGTT GGCGGGTCGG TGCTAAGGCC
TTGGCATGGT ATGGCAAAGT TTATGAGAAA ACGATCAGTA ATCGACTCGA ACAGAAAGAG
AAAGAAGCGC TATTTCAAGA GTTTATTCAT CATAGCCAGC AAGAGTTTAA TGCCTTAAAC
CCTGATGACT TTATCTATCT TGACCGTATC GGCCCGTCAA GCCGCTACAC TCAGTTACTC
ACCGCAGCCC AAAAAAGCTC AGTCTACTTC GAGGGTTATC GAACCGTCTT GATGCCAGTG
AATCAACCCT TCGAGGCGCG TAATGGTCAT AAACTGGCGT GGATTATCGC TTGGCTAAGT
TTTGGGGCCA TTCTGTGGTT GTTGATGAGT CTGATGTTAA AGCTGGATGA GACGCAGGCG
TCTAAGGCGG CACAGCTAAG CCTAGAAAAA CCTAAGGCGG AGCTCTATGG TTTTTTAGCC
GAGTTTAGGC CTCGGCAGGG CTTTGTTATC ACGCCTATCT TGCTCTATAT CAACAGCTTG
ATATTTGTAT TAATGGCCTT TGCCAGTCAA CACTTTATCG CTTTTCCAAA CAGCGTGTTA
CTCGATTGGG GGGCAAACCT TCGTCAGTTG GTGCTTGAGC AACAAGTCTG GCGTTTACTC
AGTAATGTGT TTTTGCATGG CGGCCTGATG CATTTGGTTT TTAATTTATA TGGGCTGTTT
TTTGCGGGGA TGTTTTTGGA GCCGTTGCTG GGTAAATGGC GTTTACTCGG GGTCTATTTA
TGTTGTGGCT TAGTGGCGAG CCTGGCCAGC ATAGGCTGGT ATGAGGCGAC AATCAGCATC
GGGGCATCGG GAGCCATCAT GGGGCTATTT GGCGTGTTGA TTATCTGGAT ATGGTTGGGC
TTGTTGCCCT TGGCGGACAA TATGCCACTC GCCCTCAATC TGGCCCTATT CGTCTCTGCC
AGTCTTGTTA TGGGGCTCTT TGGCGGCGTG GACAATGCCG CGCACCTTGG CGGTTTAGGT
TGTGGATTAT TGCTTGGGAG CTTATTACGG CCAACGCGAA AGGCGGCCAT ACAGCATAAA
TAA
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| Protein sequence | MRVALILKKL QLIYVPFILL CLLFVSGYSL LHWLLIIEFQ LLSIDESIIN FWLPLILPWP
LLFFYLRPRL KLFRFTKSNS RFIYFVIAVL LLAVPTIVAQ EYLNSATGKL TQLESINALL
HQPQTKYYQL NQFYIDKKHI GVQRNIEPIG KGNSELRMSL YIAMPIFAKR NESWRVGAKA
LAWYGKVYEK TISNRLEQKE KEALFQEFIH HSQQEFNALN PDDFIYLDRI GPSSRYTQLL
TAAQKSSVYF EGYRTVLMPV NQPFEARNGH KLAWIIAWLS FGAILWLLMS LMLKLDETQA
SKAAQLSLEK PKAELYGFLA EFRPRQGFVI TPILLYINSL IFVLMAFASQ HFIAFPNSVL
LDWGANLRQL VLEQQVWRLL SNVFLHGGLM HLVFNLYGLF FAGMFLEPLL GKWRLLGVYL
CCGLVASLAS IGWYEATISI GASGAIMGLF GVLIIWIWLG LLPLADNMPL ALNLALFVSA
SLVMGLFGGV DNAAHLGGLG CGLLLGSLLR PTRKAAIQHK
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