Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0803 |
Symbol | |
ID | 4250647 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 939095 |
End bp | 939838 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638117366 |
Product | spermine synthase |
Protein accession | YP_732940 |
Protein GI | 113969147 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0421] Spermidine synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.449448 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGACG CAACTTTACT ACATGAAACC CAAGATGCCC TAGGGCCAAT CCGCGTGCTC GACTATGGTG ATACCCGCGT GCTGTCCTTT GGCGACAACG ATGAGCAGAG CAAAATTCTT AAAACCGCAC CGCATATTCC GCAGCATACC TATGTGCAAG GCATGCTACT GGTGTTGTTA TTTTGCCAAC CCAAAAGCGC CATCGTACTC GGCCTTGGTG GCGGCGCCCT CATTCATGCC CTGCGCCGCT TCGATGCCGC AATCAAACTT ACTGCGGTTG AACTTCGCCC GGCGGTGATT GAACTTGCCA AGCGTTATTT TCAATTACCG ATTGGCAAAA AGCTTAATCT CATCAACGAA GATGCCGTCG CCTTTATGGC GTCGGCGGAG CATAAAAAGG TCGATGTGAT TTTTGCCGAT ATTTACAGCG CCAAAGGGGT CGACACCGGG CAGCTCTCGC CCACTTTTCT TCAGCAGTGC ACACAACTGA TTAAACCCAA TGGTTATTTA GTGCTGAACT GCTGGAAGGA ACACAGCCAA AATCGCGAGT TACTCGCCGA TCTGCAGCAC CATTTTGCCC ACGTGCATGC CTGCCTCACC AGCGGTGGCA ACTGGGTGAT TTTTGCCAGC CAAACACCAC AATCTTTGGG CGCGTCGGCG CTGAAAAGTC AGGCGCAAAC CCTGTCACAA CAACTGGATT TTGCCCTTGA ACGTTCACTG ACTCGTTTTG GCCCTTGGAT TTAA
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Protein sequence | MADATLLHET QDALGPIRVL DYGDTRVLSF GDNDEQSKIL KTAPHIPQHT YVQGMLLVLL FCQPKSAIVL GLGGGALIHA LRRFDAAIKL TAVELRPAVI ELAKRYFQLP IGKKLNLINE DAVAFMASAE HKKVDVIFAD IYSAKGVDTG QLSPTFLQQC TQLIKPNGYL VLNCWKEHSQ NRELLADLQH HFAHVHACLT SGGNWVIFAS QTPQSLGASA LKSQAQTLSQ QLDFALERSL TRFGPWI
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