| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0795 |
|---|
| Symbol | |
|---|
| ID | 4250639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 929869 |
|---|
| End bp | 930771 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638117358 |
|---|
| Product | tyrosine recombinase XerD |
|---|
| Protein accession | YP_732932 |
|---|
| Protein GI | 113969139 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTAAAA CCTATCAGTG CGATCCGCTT ATCGATGCCT TTCTCGATGA TCTTTGGTCC
AGTAAGGGCT TAAGTGATAA CACCTTGAGT GCCTATCGCA CCGATTTACG CCATTTTGAC
CGCTATCAAC AGAGCCAAGG CCTGCGGTTA ATCGAGGTGG TGCAAGCCGA TGTGCGCGCC
TATTTAGCCT ACCGAGTCGA ACAACAATTT GCCCGCACCA GTAGCGCACG TCTACTTAGC
AGTTTACGGC GTTTTTATAC TTATTTATTG CAGACCAAGC AGATTGCTGG CGATCCTATG
GCGCTGATCG AATCGCCCAA ATTGAGTCGG CAATTGCCAG ATTCCTTAAG TGAGTCACAG
GTCGATAGAT TGCTGGCCGA GCCCAATGTG GACGACCCAG TTGAGTGCCG TGATAAAGCC
ATGCTTGAAC TCTTATATGC GACTGGATTG CGGGTGAGTG AGCTGGTGGG GCTCACTCTG
GAGCAGATGA GTTTGCGCCA AGGTCTAGTG CGGATTGTGG GTAAGGGCGG TAAAGAACGG
TTAGTGCCTA TGGGCGAGCT GGCCATTACC GAGGTTGAAC GCTACTTAAG CTCTGCGCGC
CATGAGTTGT TGGGCAATGT CCAGTCCGAT GTGGTATTTC CATCTAAGCG CTCGCAGATG
ATGACGCGGC AAACTTTCTG GCATAGGATC AAGCTCTACG CGAGCCGTGC CGGCATCGAA
ACTGAACTTT CACCCCATAC CCTGCGCCAT GCCTTTGCGA CCCACTTACT CAACCATGGC
GCCGACCTTA GGGTGGTACA ATTACTCTTA GGTCACAGTG ACTTATCGAC GACTCAAATT
TATACCCATG TGGCGCGAGC GAGATTACAA GAGCTACATC AACAGCATCA TCCTCGTGGT
TAA
|
|---|
| Protein sequence | MAKTYQCDPL IDAFLDDLWS SKGLSDNTLS AYRTDLRHFD RYQQSQGLRL IEVVQADVRA
YLAYRVEQQF ARTSSARLLS SLRRFYTYLL QTKQIAGDPM ALIESPKLSR QLPDSLSESQ
VDRLLAEPNV DDPVECRDKA MLELLYATGL RVSELVGLTL EQMSLRQGLV RIVGKGGKER
LVPMGELAIT EVERYLSSAR HELLGNVQSD VVFPSKRSQM MTRQTFWHRI KLYASRAGIE
TELSPHTLRH AFATHLLNHG ADLRVVQLLL GHSDLSTTQI YTHVARARLQ ELHQQHHPRG
|
|---|
| |