Gene Shewmr4_0774 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0774 
Symbol 
ID4251496 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand+ 
Start bp900891 
End bp901907 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content49% 
IMG OID638117337 
Producterythrose 4-phosphate dehydrogenase 
Protein accessionYP_732911 
Protein GI113969118 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01532] D-erythrose-4-phosphate dehydrogenase
[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.472467 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCGAG TCGCAATCAA TGGTTATGGT CGTATTGGCC GCTCAATTCT TCGCGCTTTA 
TATGAGTCCG GAAAACGTCA GCAAATACAA ATTGTCGCAA TCAACGAGTT GGCTAAGCCC 
GAAGCCATTG TTCACCTGAC CCAGTACGAC ACTACCCACG GTCGGTTTCA GCCCAGAGTC 
AAATTAGTCG ATGATCAGAT GCTGATCGGC GATGACGTCA TCAAAATTCT CCATGAACCG 
GATCCTGCTA AGTTGCCTTG GCACGAGATG GATATCGATA TCGTCTATGA AGCGACTGGC 
GCCATCTTAG ATCGCAACAG CTGCGAGGCC CATATCCACG CAGGCGCCAA ACAGGTCTTA 
ATCAGTCACC CTTCTTCTGC CGATGTTGAT GGCACTATCG TTTACGGTGT GAACCAAGAC 
TTACTGCGCG CCGAGCATAC CGTGGTCTCC AACGCCTCTT GTACGACCAA CTGTATCGTG 
CCCGTTATCG ATGTACTGGA TAAACACTTT GGTGTGAAAA GTGGCGCGAT TACCACTATC 
CATTCGGCGA TGAACGATCA GCAAGTGATT GATGCTTATC ATGATGACTT ACGCCGCACC 
CGAGCTGCGG GCCAGTCTAT CATCCCAGTC GACACTAAAC TTGCACGCGG CATCGAGCGA 
ATTTTGCCGC ACATGAAAGA CAAGTTTGAG GCGATTTCGG TGCGCGTTCC CACGATCAAC 
GTTACCGCTA TCGATCTTTC GGTAACATTA GATAAAACAG TGGATATTGC GACCGTCAAT 
CAAGTGTTAG AATTGGCCGC CAATGGACGA TTTAACGGTA TCTTAGGCTA TACTGATGAG 
CCGCTCGTAT CCTGTGATTT TAACCATGAT CCGCGCTCAA GTATTGTCGA TGGCACCCAA 
ACTCGGGTGA GCGCAGGGCA GTTGGTTAAA CTGTTGCTGT GGTGCGATAA CGAGTGGGGC 
TTTGCAAATC GTATGCTAGA TACCAGTTTG GCGATGATTG CAGCTAAACA AAGCTGA
 
Protein sequence
MIRVAINGYG RIGRSILRAL YESGKRQQIQ IVAINELAKP EAIVHLTQYD TTHGRFQPRV 
KLVDDQMLIG DDVIKILHEP DPAKLPWHEM DIDIVYEATG AILDRNSCEA HIHAGAKQVL 
ISHPSSADVD GTIVYGVNQD LLRAEHTVVS NASCTTNCIV PVIDVLDKHF GVKSGAITTI 
HSAMNDQQVI DAYHDDLRRT RAAGQSIIPV DTKLARGIER ILPHMKDKFE AISVRVPTIN 
VTAIDLSVTL DKTVDIATVN QVLELAANGR FNGILGYTDE PLVSCDFNHD PRSSIVDGTQ 
TRVSAGQLVK LLLWCDNEWG FANRMLDTSL AMIAAKQS