Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0745 |
Symbol | |
ID | 4251431 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 866983 |
End bp | 868359 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638117308 |
Product | ATP-dependent RNA helicase DbpA |
Protein accession | YP_732882 |
Protein GI | 113969089 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTTTCT CGACTCTTAA GCTAAAACCC GAACTGCTTG AGAACCTTAC CACTATGGGC TATTACGAAA TGACGCCGAT TCAGGCGCAG AGTCTGCCAG CCATTTTAGC GGGCGAGGAT GTGATTGGTC AGGGCAAGAC GGGTTCGGGT AAAACGGCGG CCTTCGGTTT AGGCTTGTTG AACAAGTTAG ATGTGAAGCG TTTTCGCATT CAAACCTTAG TGCTGTGTCC AACCCGCGAA CTGGCTGACC AAGTAGCGCA GGAGATCCGC ACACTGGCGC GTGGTATTCA CAACGTAAAA GTGCTTACCC TCTGTGGCGG CGTGCCCATG GGGCCGCAAA TCGGTTCGCT CGAGCATGGC GCCCACATTA TCGTTGGTAC GCCGGGGCGG ATTGTCGATC ACTTAGAGCG TAACCGTTTA GACCTAAGCA ACCTGAATAT GCTCGTGCTT GACGAAGCCG ACCGTATGCT GGAAATGGGC TTCCAACCCC AGCTCGATGC GATTATCGAG CAGTCGCCAC GCGAGCGCCA AACCTTGCTG TTTAGCGCAA CCTTCCCCGA GCAGATCCAG TCGATTGCCA AGCAAATTAT GTACGACCCT GTGATGGTGA AAGTGGCCGT GACCCACGAA AAGAGCACCA TTGAGCAGCA TTTCTACCAC TTGGATGACG ACAAGGCGCG CATGCAGGCG CTGCAATTAT TGCTGCTGGA TCGCAAGCCC GAGAGTGCGG TGGTGTTTTG TAATACCAAG CGCGAAACCC AAAAAGTGGC CGATGAACTC AGCGATGCAG GCTTTAGCGT TATCGCCCTG CACGGCGACT TAGAGCAGCG TGACCGGGAT GAAACCCTGC TGCAATTTGC CAACAAGAGC GCCTGTGTGT TGGTCGCAAC CGATGTGGCT GCCCGTGGCC TCGATATCGA CGCACTGGAC GCGGTATTTA ACTACCATGT GGCCTATGAT ACCGAAGTGC ATATTCACCG TATTGGCCGT ACCGGCCGTG CGGGCAGTAA GGGCGCGGCT TTTACCTTCT TTAACGATCA AGATGGCTAC AAAATTGCGT TATTAGAAGA GTACTTAGAG CGCGATATTC AGAGCGAAGC CTTACCATCA TTAAGTTTGC TGGGCACTGC GCCCAATGCG CCAACCATGA TCACCCTGCA AATCGATGGC GGTAAAAAAG AGAAACTCCG CCCCGGTGAT ATCCTCGGCG CCCTCACTGG TGAGAATGGT ATCGAAGGCT CGCAGGTCGG CAAAATCCTT GTGACCGATT ACCGCGCCTA TGTGGCGGTG AATCGTAAAG TCGCTAAAAA GGCACTGAGT AAGATCACCA GCGGCCGCAT TAAAGGCAAG TCCTACCGCG CGTGGTTAAT GAAATAA
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Protein sequence | MAFSTLKLKP ELLENLTTMG YYEMTPIQAQ SLPAILAGED VIGQGKTGSG KTAAFGLGLL NKLDVKRFRI QTLVLCPTRE LADQVAQEIR TLARGIHNVK VLTLCGGVPM GPQIGSLEHG AHIIVGTPGR IVDHLERNRL DLSNLNMLVL DEADRMLEMG FQPQLDAIIE QSPRERQTLL FSATFPEQIQ SIAKQIMYDP VMVKVAVTHE KSTIEQHFYH LDDDKARMQA LQLLLLDRKP ESAVVFCNTK RETQKVADEL SDAGFSVIAL HGDLEQRDRD ETLLQFANKS ACVLVATDVA ARGLDIDALD AVFNYHVAYD TEVHIHRIGR TGRAGSKGAA FTFFNDQDGY KIALLEEYLE RDIQSEALPS LSLLGTAPNA PTMITLQIDG GKKEKLRPGD ILGALTGENG IEGSQVGKIL VTDYRAYVAV NRKVAKKALS KITSGRIKGK SYRAWLMK
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