Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0738 |
Symbol | |
ID | 4251424 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 858047 |
End bp | 859648 |
Gene Length | 1602 bp |
Protein Length | 533 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 638117301 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_732875 |
Protein GI | 113969082 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCAATCA TAGATCCCAT AGTGACAGGC TTAAATTCCG GTTGGTTACA TACCGACGCC AGTCAGCTGC AAGAAAACCA GCAATTTGAA GCCGATGTGG TGATTGTAGG CACGGGCGCA GGCGGCGGTG TGGCGGCGGA GATCCTCAGC CAAGCGGGGC TTAGTGTGAT CATGATTGAA GCGGGGCCGC TTAAATCCTC CAGCGACTTT AATATGGAGG AGCGGGTCGC TTACCCTAAT TTGTATCAAC AGGCGGCCGC GATGAAAACC GCCGATAAGG CGATTGGGAT TTTTCAAGGT CGCGCCGTGG GCGGCTCGAC CACCATCAAT TGGACCACCT CGATTCGTAC TCCTAAGGAA GCCTTAGCCT TTTGGGCGCA GCATAAATCC GTTGCGGGTC TCGACCCCGA CGCTCTGGCC CCTTGGTTCG AGCAGATGGA GCAGCGGCTT AATATTCATG AATGGAATTA TGAACCTAAC CGCAATAATG GCGCCCTCAA GCAAGGCTGC ATCAACCTAG GTTGGGATTA CACTGTTATT AAGCGTAACG TGGCGGGCTG TTGGAATACT GGTTATTGCG GCATGGGTTG CCCAGTCAAT GCTAAGCAGT CGATGTTAGT GACTACGATT CCGACTGCAT TAGAGAAGGG CGCGCAGCTT TTTAGCCGTG CCAAAGTCGT TAAGATTGAA CACCATAATG GCCAAGTGTT TGCCCTCAAG GCGCAGGCGC TTGATGTTAA TTTACGGCCG ACGTCGGTCG AGCTGTTATT TAAAGCCAAA CACTATATTT TAAGCGCTGG CGCTATCCAC ACGCCGACCT TGATGATGCG CTCCGACGTG CCCGATCCCT ATCAGCTATT GGGCAAGCGT ACCTTTTTGC ATCCTACAGT GCTCTCTGGC GGCGTATTTG CCGATGCCAT TAATGCCCAC AGTGGGGCGC CTCAATCTAT CTATTCCGAT GAATTTGTTT GGAAAAATGG TGCCGATGGC GAGTTAGGTT ACAAGCTTGA GGTGCCGCCG GTGCATCCGA TTTTGATCGC CTCTAAAACC TTAGGTTACG GCGCCAGCCA CGCCGAATTG ATGGCGCAAT TTAATCAGCT ACAGGTCACT ATCGCCTTGA TCCGCGACGG TTATCATCCC GATAGCCAAG GTGGGCAAGT GCATCTCACC TCGACGGGCT TTGCCTTAGA TTATCCGCTC TCCGAGGCCT TTTGGCGTGC GGCGCGGCGG GCGTATGCCA GCATGGCCGA ATTGCAATTC TCGGCGGGGG CATTAAAAGT GCTGCCCATC AGTGATGGCA TGCCTTATCT GTCGTCATGG AAGGAGGCGA AAGAGAGCAT TGCGCAAATG GATTTAGCGC CGCTGCGGAC AATCGTCGCC TCGGCGCACG TGATGGGCGG TTGCCCCTTT GGCGAGGATG AAAAGCTCTC TATGGTGAAT AGCTATGGTC AGTCACATTA TCTGGATAAT CTGTCGGTGA TGGACGGTTC TATCTTCCCG ACCAGTCTCG GGGCCAATCC GCAGCTGTCG ATTTATGGCA TTACCGCGCG CAATGCCACG GCGCTGGCGC AAAAGCTGAC CGATGGCCGA GAGCCGCAAT AG
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Protein sequence | MAIIDPIVTG LNSGWLHTDA SQLQENQQFE ADVVIVGTGA GGGVAAEILS QAGLSVIMIE AGPLKSSSDF NMEERVAYPN LYQQAAAMKT ADKAIGIFQG RAVGGSTTIN WTTSIRTPKE ALAFWAQHKS VAGLDPDALA PWFEQMEQRL NIHEWNYEPN RNNGALKQGC INLGWDYTVI KRNVAGCWNT GYCGMGCPVN AKQSMLVTTI PTALEKGAQL FSRAKVVKIE HHNGQVFALK AQALDVNLRP TSVELLFKAK HYILSAGAIH TPTLMMRSDV PDPYQLLGKR TFLHPTVLSG GVFADAINAH SGAPQSIYSD EFVWKNGADG ELGYKLEVPP VHPILIASKT LGYGASHAEL MAQFNQLQVT IALIRDGYHP DSQGGQVHLT STGFALDYPL SEAFWRAARR AYASMAELQF SAGALKVLPI SDGMPYLSSW KEAKESIAQM DLAPLRTIVA SAHVMGGCPF GEDEKLSMVN SYGQSHYLDN LSVMDGSIFP TSLGANPQLS IYGITARNAT ALAQKLTDGR EPQ
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