| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0715 |
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| Symbol | |
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| ID | 4251156 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 829768 |
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| End bp | 835071 |
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| Gene Length | 5304 bp |
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| Protein Length | 1767 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638117278 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_732852 |
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| Protein GI | 113969059 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAAAA GTAAACTTCG TACTTTTCGC AGCAAGATCT TATCCCATAT TGCGCTGCCA
TTGATTCTAA TCATGGCAGC CGTTTATGGT ATTAATGCTT GGTTTAATTA TCTTTCTGCC
GAGAGCAAGC TTTACGATTC CTTAGCTCAG GCATCCAACC ATTCCGCCTA TCGCCTACAA
CTGCTACTCG AGCATGCGCA GATCAATACT CAAGGAATGG CGGATTTTAT TGGGTTTATC
ACCAATAAAG AAGACATCAG TAACAGCGAG AAAATCAAAC GGATACTCAC CAATCGCCTC
GAACGCAACC CCGATTTTTA CGGCTCTGCC GTTGCCTTTA AGCCATACAC TTTTGCAAAT
AAAAAACTCT TTTCTCCCTA TGTTTTCCGT GATGGTGATG ACTTCCATTA CTTAGATATT
GGCGCCGAAG GCTATGACTA CACAGACGGC TCTTGGGATT GGTGGTCTAA GGCGATTAAT
CAAGCGGGAG GATATTGGTC TAAGGTTTAC TTTGATGAAG GAGCCGGCAA CACCTTAATG
GTGACCTATT CTGTCCCCTT TGGTCCTGAA AATGCTTACT TTGGGGTAGC GACTGTCGAT
TTAGCCCTAA ATCAATTACC CGAGCAGCTA GGTGTGTCAC CGAGTCAGTT AGTGGTGCTC
GATGATCAAG GACGGCTCAT CTTCCACAGC GATAAAGAAA AAGTGCTCGC GATGACTTCG
GCCGAATGGC TAGATAGGAA TACTCGTCAG AATAAAGACT TTTGGGCGCT ATTGGATAAG
GGGGTGAATG GCCAAGCACG GTTTGTGGAT GACAAGAACC TAGTCTACCT CGCCAGCGTT
GCATCGGTCG CTAAGCATAA GTGGCGCGTG ATTGTCATGG TGCCCGAGCA ACAACTATTG
TCTACGCTAT TGGATGATAT GGCCTCCGTG GTACTCAACC TCAGTTTACT GACGCTGCTG
CTGATATTGA CCTGCTATAT CGCCGCGAAA CGTCTGACGA GGCCGCTTGA AATGCTGGAG
TCTGGTATTT TGGCCTTCGG TCAGGGGAAA ACTCAACAAT TAGCGATCCC TAACGGAGCC
GTCAGTGAAA TAGTCACCTT AAGCAGCACC TTTAATCAGA TGGCGGAACT CCTCGCCGAA
CGTGAACAGG CGATTTTAGA TTCCCGTGGA AATCGCTTTG CACGGTTAAT CGACGGTATG
AGTGATAAGT CATTCTACTG CTCGCTCGAC GCTTCAGGGC AGCTGGCTCA GGTGAGTGAG
GGGGTTACTA AGGTCTTAGG TATGTCGCCT GAGCTACTCA AGCGCAAGTA TCAAAGATTA
TTTACCGCCA ATCCCTTAAA TGAAAAGAAT TGGGAATATA CAGACTTGGC CCTCAAGGGA
CAAAACGTAC CCTCTCATCA AGTGGAATTA CTCGATGCGG GTGGTCATCC GCGCAGGCTC
GATCTCTTTA TGCAGCCCCT AGTCTCAGAT ACGGGCGAGC TGATGTCGGT AGAGATGTTA
TTTACCGATG TGACAGAGCA GTTCTCCGCC GCGGCTTGGT CTAATGCCGT GCTCGAAGCG
GCACCAGAGG CCATGTTAAT CGTGGACCAA ATGGGATTAA TTGTCTTCAG CAATACTCGC
TGCCAAATTC TCTTCGGTTA CGAAGCCAGC GCAATGTTAG GGCTGCAGGT CGAATCATTA
TTGCCAGAAG CATTGCGTAG TAACCATGCC CGCGATCGCC TGCAATTTTT GCGTGAAGGG
CGCGATCGCC CCATGGCCAA TGCAAAGCAT GTGCGGGCGC TCAAAGCCGA TGGCGGGGAG
TTTGTCGCCG AAATCGCCTT GAGTATTTTA CCTGCCGATA ACGAGGGGCG TCGCCAAGTG
GCGGCTTCGA TTCGGGATAT GACCCAGAAG TTAGCCGTCG AGCAGAAAAT TCGTGACAGC
GAATTAAGGT TCCGCGGTCT GGTGACGAAT ATTCCCGGCG CCGTCTATCG TACCCGCATA
GGCGATGTGT GGGTGATGGA ATATGTCAGT GAAAACATTG CTGATATTAC AGGTTATGCC
GCAAGCCAGT TTATTGAGAA TCGTCAACGC ACCTTTGAAT CGCTGATCTT GGAAGAAGAT
CGTGCCCTGT GCCATCAACA TATCGATAGG GCGCTGGCGC AGCAGGAAAC CTTTGAAGTG
GAATACCGCA TTCGCCATCG CGACGGCAGT GTGCGTTGGG TACATGAAAA GGGCAAGGCG
AGTTATACCG ATGAGGGCTT CCCGCTGTGG TTCGATGGCA GTATCGATGA TATTACCGAG
AGTAAGCTGG CTCTGGTCGA GCTTGAGAGT TCACGTCAGC AATTAACCAA TATTACAGAG
TCGATCCCTT GTACTGTGTA TCAGTTGCGC TGGATTTCAC CTGTCGATCG CACCTTTACC
TTCTTATCTG GCGCGGCGTA TCACATGCTT GGCTTACATC GCGATGATTT ACTTAAAGAT
TTCAATATCA TTGCCGAGCG GATTTTTGAT GAAGAACGCT CAGAGGTTGT GCGTGCCTTA
GCGGGCAAGA GTGAGGATAA ATTGCAGTGG GTGCGTGAGT TCCGTTATCG CCACCCTAAT
GGCAGCACCC GTTGGATGGA GGCGGGAGCC AGCGGTCATA TTTGCGATGA TGGCGCCATT
ATCTGGAATG GCTATGTGAT GGATATTACC GAACGCAAAG CCATGGAAGA AGAGCTTGCA
GTGAGTGAAG CGCACTTTAA GGCATTGTTT GATGGCTCCA CCATTGGCAT TGTGAACATC
GATGCTAAAG GGGTAATCCT CGATTGTAAC GACCAATATT GTGAAGACAT GGGCCAGTCC
CGTGAGTCAC TCTGCGGCAT GTCGATTTTC GAGGTTTTAA GCCTACAGGA TAAAGAAACC
GCCAAGGCGC AGTTTAAGGA ACTGGCGGAG GGCCGAGTCG ATCATTATCG CGGTGAGCGA
AGCTTTATTC GCCCCAATGG TGAACCGCTG TGGATGACGG TCAATGTGTC GGCACTCTTC
GATAGCCAGA AACGGTTTGA ATCGGCCGTG GTCAGTATGG TCGATATGAC GGAGTTAAAA
CTGCTGTCTG ACGAGCTGTT AGTCGCGAAG GAAGAGGCGG ATGCAGCGAG TAAAGCCAAG
GGTGACTTCC TCGCCAACAT GTCCCACGAA ATCCGTACGC CAATGAATGC GATTATCGGT
ATGTCGCAGC TTTGTTTGCA GACGGAACTC GATAAGAAGC AGAAAAATTA TGTGGAGAAA
ATTGAGCGCG CCTCAAAATC CTTGCTCTCC ATCATTAACG ACATCCTCGA CTTCTCCAAA
ATTGAAGCCG GTAAGTTAGA TATCGAATCG GTTCCCTTCC AGCTCGATAC TATGCTGGAA
GATCTCAGCG ATATGTTCTC CGAGAAAGCG GCCCATAAAC AGCTTGAACT GTTGTTTGCA
GTGGCGCCGA ATGTGCCTAG GCACCTGTTT GGCGATTCGC TACGCCTTGG GCAAGTGCTG
ATCAACTTGA TGAACAACGC AATTAAGTTT ACCGAGCGGG GCGAAGTGTT GTTATCGCTC
AACTTGGTTG AGCAGCAAAA TGATGATGTG GTGCTGCGCT TTAGTGTGCG CGACAGCGGT
ATCGGCTTAA CCGCCGAGCA GCAGGCCAAA CTGTTTAAAT CCTTCAGTCA GGCCGACACC
TCGACCACCC GTAAATATGG TGGCACAGGC TTAGGGTTGG CGATTTGTAA GCAGTTAGTC
GAACTGATGG GCGGCACTAT TGGGGTTGAA AGCCAGTTCG GCCACGGCAG TACCTTCTAC
TTTACCGTTA AGTTGCAGAT TTCTAGCGGT CAAAAGCTGA CGGTTGCGCA AGAACTCGAA
GGTATGTCAA TTCTGGTTGC CGATGATAAT GCCACCGCCC GTGACATCAT GCGCACCACA
TTAGAGAGCA TGGGCTTTAG GGTGGATACG GTGCGCTCCG GTGAAGAGGC TGTAACGCGT
TGTAGCCAGC AGGAATATGC CGTCGCCCTG ATCGACTGGA AAATGCCGAA TCTTGACGGA
ATAGAAACGG CTAAGCAAAT CAAACAATTG GCGAAGAACG CACCGCGGAT CTTGATGGTG
TCGGCCCATG CTACCCAAGA GTTCTTAAGC CAAATTGAAG CGTTGGGCTT GGCGGGCTAT
ATCAGTAAAC CCATCAGTGC CTCGCGGTTG CTCGATGGTA TTATGAATTC CCTTGGTCGA
GCTGGCGTCC TGCCTGTCAG ACGTAACAGT GAGAGCATAG ATCCTAAACT CCTGCTGCCG
CTTAAGGGCA AACGTATCCT CTTGGTGGAG GATAACGAGA TGAACCTTGA GGTGGCCACC
GAGTTTTTAG AGCAAGTGGG GATTATCTTA TCCATCGCCA CCAACGGTCA GATAGCGCTC
GATAAGCTGG CGCAGCAGAG CTTCGATCTG GTGTTGATGG ATTGCCAGAT GCCAGTGATG
GACGGTTATC AGGCCACTCA GGCGATTAGA AAACGGCCAG AACTTGCCGA GTTGCCCGTG
ATTGCGATGA CGGCTAATGC GATGGCGGGT GATAAGGAAA TGTGTTTAAA AGCAGGGATG
AATGACCATA TCGCTAAGCC GATAGAGGTC AACTTGCTGT ATCAAACCCT GCTTAAATAC
TTAGGTGCCG GTGTGCTACC GACCGAAGCT GCTTCTCCTA ATCAATTGGT TGAAATCCCC
GTTAAACCTA TCAATCTGGA TTCAAAGTCC GTCGTAAAAT GGCCTGAACA TCCGGAATTA
GATATCGATA GGGGGTTACA GTTAGTTCAA AACTCAACCC GCCTTTATCA GCGGATATTT
GATCGTTTTG TGACCAGTCA ACGTAATGTG GTTGAGTTGA TTAATAAAGC GCTCGCCAAC
GACAAGCGTG ACGATGCCGT GCGGATGGCG CATACCTTAA AGGGGCTAGC GGGTAACTTA
AGTTCCAGCA AGCTGGTGGA ATTGGCGCGT CAACTGGAGC TGCACCTCAG CGAAAAGACG
GAATACCAGA CGGAGTTGGA CCAAATCCAA GTCTTAGTCG CGTCGATTTG TGAAGCCATT
GAGCGGGTTA ACCCTCAGTT TGAAGAGCCA ACTCAATCGG CGACAGAGCA CTTGTCCCAG
GAGGCGCTGG TGAGTGCCTT AAACCAATTG CGTCAAAGCT TGGAGGATGC CGATTCCGAT
GCGGTGACAC AAATTGATGC ATTAAAACCC CAAGTGAGTA GCAAGTTATG GCAGCAACTC
AGCCCTGCGC TGACTATGAT TAATCAGTAT CAGTTCGATG AAGCGGTGGA TTTGATTGAT
GAAGTGCTTG CGGAATTAGC ATGA
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| Protein sequence | MDKSKLRTFR SKILSHIALP LILIMAAVYG INAWFNYLSA ESKLYDSLAQ ASNHSAYRLQ
LLLEHAQINT QGMADFIGFI TNKEDISNSE KIKRILTNRL ERNPDFYGSA VAFKPYTFAN
KKLFSPYVFR DGDDFHYLDI GAEGYDYTDG SWDWWSKAIN QAGGYWSKVY FDEGAGNTLM
VTYSVPFGPE NAYFGVATVD LALNQLPEQL GVSPSQLVVL DDQGRLIFHS DKEKVLAMTS
AEWLDRNTRQ NKDFWALLDK GVNGQARFVD DKNLVYLASV ASVAKHKWRV IVMVPEQQLL
STLLDDMASV VLNLSLLTLL LILTCYIAAK RLTRPLEMLE SGILAFGQGK TQQLAIPNGA
VSEIVTLSST FNQMAELLAE REQAILDSRG NRFARLIDGM SDKSFYCSLD ASGQLAQVSE
GVTKVLGMSP ELLKRKYQRL FTANPLNEKN WEYTDLALKG QNVPSHQVEL LDAGGHPRRL
DLFMQPLVSD TGELMSVEML FTDVTEQFSA AAWSNAVLEA APEAMLIVDQ MGLIVFSNTR
CQILFGYEAS AMLGLQVESL LPEALRSNHA RDRLQFLREG RDRPMANAKH VRALKADGGE
FVAEIALSIL PADNEGRRQV AASIRDMTQK LAVEQKIRDS ELRFRGLVTN IPGAVYRTRI
GDVWVMEYVS ENIADITGYA ASQFIENRQR TFESLILEED RALCHQHIDR ALAQQETFEV
EYRIRHRDGS VRWVHEKGKA SYTDEGFPLW FDGSIDDITE SKLALVELES SRQQLTNITE
SIPCTVYQLR WISPVDRTFT FLSGAAYHML GLHRDDLLKD FNIIAERIFD EERSEVVRAL
AGKSEDKLQW VREFRYRHPN GSTRWMEAGA SGHICDDGAI IWNGYVMDIT ERKAMEEELA
VSEAHFKALF DGSTIGIVNI DAKGVILDCN DQYCEDMGQS RESLCGMSIF EVLSLQDKET
AKAQFKELAE GRVDHYRGER SFIRPNGEPL WMTVNVSALF DSQKRFESAV VSMVDMTELK
LLSDELLVAK EEADAASKAK GDFLANMSHE IRTPMNAIIG MSQLCLQTEL DKKQKNYVEK
IERASKSLLS IINDILDFSK IEAGKLDIES VPFQLDTMLE DLSDMFSEKA AHKQLELLFA
VAPNVPRHLF GDSLRLGQVL INLMNNAIKF TERGEVLLSL NLVEQQNDDV VLRFSVRDSG
IGLTAEQQAK LFKSFSQADT STTRKYGGTG LGLAICKQLV ELMGGTIGVE SQFGHGSTFY
FTVKLQISSG QKLTVAQELE GMSILVADDN ATARDIMRTT LESMGFRVDT VRSGEEAVTR
CSQQEYAVAL IDWKMPNLDG IETAKQIKQL AKNAPRILMV SAHATQEFLS QIEALGLAGY
ISKPISASRL LDGIMNSLGR AGVLPVRRNS ESIDPKLLLP LKGKRILLVE DNEMNLEVAT
EFLEQVGIIL SIATNGQIAL DKLAQQSFDL VLMDCQMPVM DGYQATQAIR KRPELAELPV
IAMTANAMAG DKEMCLKAGM NDHIAKPIEV NLLYQTLLKY LGAGVLPTEA ASPNQLVEIP
VKPINLDSKS VVKWPEHPEL DIDRGLQLVQ NSTRLYQRIF DRFVTSQRNV VELINKALAN
DKRDDAVRMA HTLKGLAGNL SSSKLVELAR QLELHLSEKT EYQTELDQIQ VLVASICEAI
ERVNPQFEEP TQSATEHLSQ EALVSALNQL RQSLEDADSD AVTQIDALKP QVSSKLWQQL
SPALTMINQY QFDEAVDLID EVLAELA
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