| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0524 |
|---|
| Symbol | |
|---|
| ID | 4251647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 603446 |
|---|
| End bp | 605053 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638117083 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_732661 |
|---|
| Protein GI | 113968868 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAA TTGCTGCGGC ACCTGAAGCT ATCGCCGCGG GGGCTACACC GAGCGAATAT
GAGCGTGGTA GTCGCCGTTC GTGGATTGCT GTTTTCGGTG GTTTGATTGG CGCCTTTATG
GCGATCCTCG ATATTCAAAT CACCAATGCC TCGATGAAGG AAATCCAAGG AAGTCTCGGC
GCTACGCTGG AGGAAGGCAG TTGGATTTCA ACGGCTTATC TGGTTGCCGA GATGATTGCG
ATCCCGCTCT CGGGTTGGTT AAGCACAGGG CTTTCGGTCA GGCGTTATCT GTTGTGGACC
ACAGCTGCCT TTATCTTTGC CTCTATTCTG TGTTCGATTT CGTGGAACCT CGAGGCCATG
ATCGCCTTTC GGGCGTTGCA GGGCTTCTTT GGTGGCGCGC TGATCCCGCT GGCCTTTCGG
TTGATCTTAG AATTTTTACC CGAGAATAAA CGTGCCGTGG GGATGGCGCT CTTTGGCGTG
ACTGCGACGT TTGCGCCCTC GATTGGCCCA ACCTTAGGTG GTTGGTTAAC CGAGCATTTT
AGTTGGCATT ACCTGTTTTA TATCAACGTG CCGCCCGGAT TGCTGGTGAT GGCAATGTTG
GCCTATGGTC TCGAAAAACG CCCTGTGGTG TGGGATAAAC TGAAGAATGC CGACTTAGCG
GGCATTGTCA CTATGGCGCT AGGCATGGGC TGCCTCGAGG TCGTGCTTGA GGAAGGTAAC
CGCAAGGATT GGTTTGGCTC GGATTTGATC CGCAATCTCG CCATCATTGC CGCGGTGAAT
TTAGTGCTGT TTGTGTGGAT CCAGCTTAAA CGTAAAGATC CTTTAGTGAA TTTGCGCCTG
CTCGGTAAAC GCGATTTTGT GCTTTCGACC ATAGCTTACT TTTTGCTGGG GATGGCTCTC
TTTGGCGCTA TCTATTTGAT CCCACTTTAT TTGTCTCAAG TGCATGATTA CACGCCGCTG
GAAATCGGCG AAGTCATTAT GTGGATGGGG TTCCCGCAGC TCTTGGTATT GCCATTAGTG
CCGCGTTTAA TGCAACGTTT CGACGGGCGT TATTTAGCCG CCTTCGGCTT TTTTATGTTT
GCCCTCAGTT ATTACATGAA TAGCCAAATG ACCGCCGATT ACGCAGGGCC GCAGATGATC
GCCTCCCAAG TGGTGCGCGC CTTAGGCCAG CCCTTTATCT TGGTGCCCAT TGGCATGTTG
GCGACGGCCC ATTTAAAGCC CCATGAGAAT CCTTCGGCTT CGACCGTATT GAACGTGATG
CGTAACTTAG GCGGTGCCTT TGGTATTGCG CTGGTGGCGA CCTTAAGCGA TAACCTTGCC
CGCGGTCATT TTGCCCATGT GAAGGAGTCT TTACCAGCGG TCAGCACACA GGCGCAGGAC
TATTTGAATC AGAGCGCCAG TATGTTGCAA CAGGGTGGCT CGGATCCCTA TACCGCCTCG
ATGCAGGCCA AAGCACTATT AGGGCAAACC ATGAGTCAGC AGGCCTATAT TCAAGCCTAT
AACGATGTGT TTTTGATTAT GGGGGCCATG TTGTTAATTG CCGTGGTGGC TGTGCTGCTT
ATCCGTAAAC CTCAAGGGCC AGTCGCCCAT GATGCGGCAA TTGAATAA
|
|---|
| Protein sequence | MSTIAAAPEA IAAGATPSEY ERGSRRSWIA VFGGLIGAFM AILDIQITNA SMKEIQGSLG
ATLEEGSWIS TAYLVAEMIA IPLSGWLSTG LSVRRYLLWT TAAFIFASIL CSISWNLEAM
IAFRALQGFF GGALIPLAFR LILEFLPENK RAVGMALFGV TATFAPSIGP TLGGWLTEHF
SWHYLFYINV PPGLLVMAML AYGLEKRPVV WDKLKNADLA GIVTMALGMG CLEVVLEEGN
RKDWFGSDLI RNLAIIAAVN LVLFVWIQLK RKDPLVNLRL LGKRDFVLST IAYFLLGMAL
FGAIYLIPLY LSQVHDYTPL EIGEVIMWMG FPQLLVLPLV PRLMQRFDGR YLAAFGFFMF
ALSYYMNSQM TADYAGPQMI ASQVVRALGQ PFILVPIGML ATAHLKPHEN PSASTVLNVM
RNLGGAFGIA LVATLSDNLA RGHFAHVKES LPAVSTQAQD YLNQSASMLQ QGGSDPYTAS
MQAKALLGQT MSQQAYIQAY NDVFLIMGAM LLIAVVAVLL IRKPQGPVAH DAAIE
|
|---|
| |