| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0451 |
|---|
| Symbol | |
|---|
| ID | 4251575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 513321 |
|---|
| End bp | 514940 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638117010 |
|---|
| Product | PepSY-associated TM helix domain-containing protein |
|---|
| Protein accession | YP_732588 |
|---|
| Protein GI | 113968795 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTC GCAGTGATGT GTTAAGGGTG TATCAGTCTA TCCATATTTG GACTGGGATC
ATCGCCGGAA TAGTGTTGTT TATCGGTTTC TATGCCGGAT CGCTCACTAT GTTTAAAGGT
GCGATTGACG CTTGGTCAAT GCCGCCCTCT GTGACTTTGC CGCAAGTCTC TGCTGATAGG
CTCGATGAGT TAGTGTCGCA GGTGTTAGCT CGGGACGATA AGGCGAAAAA CGGCTTTAGT
TTGCATTTGA ATGATGAACA TCAGTCGCCG ATGACTTGGT ATCAGCAGGG CTCGGAGCGT
GAACTCAGCA TGAGTAACCA GCTTTGGCAT GCCAGCCTCG ACGAGCAGGG GCAATTAGTG
ACTCAACTAA GCACCCCAAG CGAGCTGGCC GAGCTGATTG ACCAATTACA CCGCACTGCG
GGGATTGCCG GTGAAGTGGG CCACGATCAA GCGGGTGTCT ATGTGCTCGG CGTCGCCGCC
TTCTTATATT TCTTGGCGCT GGTTTCTGGG GTGATTTTCT TACTGCCCAC CTTAACTAAA
AGCTTTTTCG CCCTACGTAA AGATAAGGGC GAAAGCCGTT TCTGGCTCGA TGCCCACAAC
TTAGTCGGCA TTACTAGTTT GCCATTTCAT CTAGTGATCA GTCTGACCGT GATAGTGTTT
GCCTTCCATG ATCAGCTTTA CGATGGGCTT AAGCAGGTGG TTTACGGTGA AAAACCGCTG
TTTGCCCAAC CCGCACCCGA TAGAACGCCC TATACACTCG CCGATTTGCC TAAGGTCAGC
ACAGTTCTGG CTAAGGTGCA GGAGCTCGCC CCCGAGTATC AAGTGCATGA AATGACCTTT
ATGAACTTGA ATAATCCTCG CGCGACCTTG CGTTTAGGCC TGTACAACCC TAGCGGTTTT
ATGCGCGGAC CAGTCACCGA TTACTTATAT CTGCATCCCT ATAGCCTCAA GATAACCAAC
AGCACCATTG ACCAGAGTGA TAAGGGCATT TGGGCCAGAA CGGTCGCGGT ATTCTTTGGG
CTGCACTTTG GCAGTTACGG CGGCGATCTT GGGCGCTGGG TGTATTTCTT TTTAGGCTTG
AGCGGCGCCT TTTTATTTTA CAGCGGTAAC TTGTTGTGGC TGGAAAAGCG CCGTAAAAAA
CAGGCGAGTG AGCAGACGCG TGCCTGCCGA TTAATGGCGA GCGCCACCGT GGGGATTTGC
TTAGGTTCGG TTGCCGCTCT GGCGGTGAGC ATGCTGCTGG GGAAATGGTT CTACTCACAG
GTGAGCAATA TTAATCATCT CTATCTGTGG TTGTACTATG TCGTCTTCGC CGCCTTAGTG
GCCTATGCCT TCTGGCGCGG CGCGGCTAGG GCGGCACTGC TGATTTTACC TCTGTGCGCC
TTGGCGACTC TGGCTATGCC TATTAGCTCT GTGATCGGGC TGTTAGTGCC GAGTCTAGGC
TTATGGGCGC CCCATTCTGC GGCAACGCTT GGGGTCGATC TCGTGGCGCT CGGCTTTAGT
GGGCTGTTCT ACTATGGATA CCGACTCACG CGCCATCGCT TATTCAATGG CCCGCAGGAC
AGTGTCTGGG CGATTCCCAA TAAGGATGCT GTGGTCGAGA CCGCTTCAAA AACAGTTTGA
|
|---|
| Protein sequence | MKVRSDVLRV YQSIHIWTGI IAGIVLFIGF YAGSLTMFKG AIDAWSMPPS VTLPQVSADR
LDELVSQVLA RDDKAKNGFS LHLNDEHQSP MTWYQQGSER ELSMSNQLWH ASLDEQGQLV
TQLSTPSELA ELIDQLHRTA GIAGEVGHDQ AGVYVLGVAA FLYFLALVSG VIFLLPTLTK
SFFALRKDKG ESRFWLDAHN LVGITSLPFH LVISLTVIVF AFHDQLYDGL KQVVYGEKPL
FAQPAPDRTP YTLADLPKVS TVLAKVQELA PEYQVHEMTF MNLNNPRATL RLGLYNPSGF
MRGPVTDYLY LHPYSLKITN STIDQSDKGI WARTVAVFFG LHFGSYGGDL GRWVYFFLGL
SGAFLFYSGN LLWLEKRRKK QASEQTRACR LMASATVGIC LGSVAALAVS MLLGKWFYSQ
VSNINHLYLW LYYVVFAALV AYAFWRGAAR AALLILPLCA LATLAMPISS VIGLLVPSLG
LWAPHSAATL GVDLVALGFS GLFYYGYRLT RHRLFNGPQD SVWAIPNKDA VVETASKTV
|
|---|
| |