| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0431 |
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| Symbol | |
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| ID | 4251905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 482077 |
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| End bp | 486561 |
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| Gene Length | 4485 bp |
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| Protein Length | 1494 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638116990 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_732568 |
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| Protein GI | 113968775 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0710833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATGAAG TAAGTCATCA AATGCAAACA AGAATATCTA AAACACTTCT GGCATGTTTC
ATCCTTTTTG TCTCTGGTCT GAACATGGTT TGGGCCGGTG GATTTGTGCA GCGTGTTTTC
ACCGACAGAG ATGGACTAGC CGCCACTAGT ATCCGTGGCT TGACCTTAGA TGACCATGGT
TTCATCTGGG CGGCGACGGA GCAGGGCTTA TATCGGGTTA GCAATTCTAA GGTCAGACGC
ATAGACAAAA CGGGCAGCGA GTCCCGTCTT GCGGATGATT TCCTCAACTC AGTGGTTAAC
GTAGGGCAAG ACAAGCTGCT GGTGAGCACC AACGCGGCGC TTTACCTCTA CGATATCCGC
AACAATCAAT TTACCCTGTT TGGCTCCCCC GATTTGTTTC CGCACTTTCC CGGTGGCGCC
ATGTTGTCTG CTGCGCGCAT GGATGCACAG CATTGGCTAT TACTGATTGA TAATGGCCAG
ATTTATCAAT ATTCGCCTAC GACTTCTGAA CTCACTCTGG TGACTCAACT GGCGGTTAAT
CGCGATCTGC CTTGGCGCAA GCTATTGGTG CTACCCAATG AGCAAATACT ACTGGCGGGG
CAATTTGATT TATTGCTGCT GGATAAGACA GGTAAAACCT TAAGCAAATA TCCTTGGACT
GAGTCTATGG GAAGCATTCT CGATATGCTT GAGGATACAA AGCATAGAGT TTGGTTGGCG
ACGAGCCGCG GCGTGTATCG GTTTGATCCC AGCTCGCAGC AACTTGAGGC TGTGGCAGAA
TTACCCGATT GGAGCACAGT GATTGTTGAG GATCCTAAGG GGGCGTTGTG GTTTGCCAGC
CGTTTTGGTC TGTTGAAATG GTCACCTGAG ACGCACCAGA TTGAGAGTTA TCAAGAGGAA
CTAAAAAAGC AGGCCAATAT GGAAATCCTC AAGGCCATGC TGTTCGATGA CTCAGGCTTA
ATGTGGGTGG GCGGCTCGGG TGATGGTTTG GCATTGTTGG CATCACAGCC CGATTTTATC
TTAGAGACTT ATACGGCAGA TAAACCTTAT GCGCTGAGCG ATGCCATGAT TTGGTCGATT
CTAGCAGCAC CAGAGGGGCT CTGGTTTGGC TCATCCAATG TGATGTTTAT TGCCAAGGAT
ACTCAGCAAG CTATTGATAT TCCGATTGAA GGCTTGCTCT CCCATGAGAG CATTTACGAT
ATCAGAGCAT TTTCTGAGCA TTATTTGCTG GTCTCTACCA CTAGTGGTTT GTTTGTAGTC
GATAGGACAA CCTTAAAGGG ACAGAGCTTT GCACAATGGA TAAATGGGCA GGATGAATTT
AAAAACAAGC TGGTTTACCG CACCTATATC GATCCTTTGT TAAAGGGGCG AGTGTGGATT
GCCAGTTCCA ATGGGCTGTA TTTCTGGGAG CTCGGCTTAA AAGCGCCACA AGCATTTAAT
ATCGATAAGC TCTCTGAAGG GGATGTTGAG CCGAAGCGCC CAGCGATTCG AACCTTGTAT
CGTGCCTCCG ATGGCAAACT TTGGATTGGC GGTAAGCGAG TTTTTGGCTA TCTAGACGAG
GCGAATGAAT TCCATGATCA GCGCAGCCTA TTTAATGGCT TGAGTGCCAT GCCCACCGTT
AGCCATATCG AAGAAATGTC TCCAGGGATC ATGTGGTTTG GCTCCTACGA AAAGGGATTA
TTCGAGTATC ACCTCAATAG CAGTGAACTG GTTTCTCTAA CCGCGCTGTG GCAAGTGAGT
TGCAGCTCAG TGTTTTTTAT CCAAAAGACG CCTAAAGCCA ATCTGGTAGC CTGCGCCGAT
TCGCTTATCC GCCAAGATAT CGCAACTGGG CATATCGAAA TGTTTAATCA ACTCGATGGG
TTAATTTCCG ATGAAATGAA TGAAGGTGCG TATTTTTATT CGCCTGAGTT GGGCTTGTAT
CTTGGCACAC CGGATGGCGT CATGCACCTC GATGTGGATA AGCTGACCAA CCGGATCACC
GACGATCATG TGATGCTCGA GTCTGTGTCT GTCTATTACG ATAACAGTAC GGAAGTCTCC
CTACTGCCCC AGCCCATGAT GCAGATTAAG CCCGATGCCA GCATGGTGAG TTTGCAGATC
ACAAACCTTG ATTATCTCGA TGATTCGCCG ATTCAATTTA AATATCGGCT GCGTTATCAA
GGAGAAGATG ATAACTACGT ACTGCTCCAA GGCGAGTCAC AGATAAACCT CGCCGGACTC
GCTGCGGGCG AGTATGGGCT GGAGATTTTA AGCCAAGTGA ATGGGATCTG GTCGGATAAA
CCCTTCGTTT ATCCCTTCTA TGTTGAGCAA CATTGGTGGC TAACGCAGGG CTTTAAGGGC
ATATTACTGT TGGTGTTTTC GATAATTGCC CTGAGTCTGG CCTGGTATCG TCAGCGCCAA
GTTCGTACTT TTATGGCGAT GAACCAAGCG CTGACCGAGA GTGATGATCG CTTGCGCCAG
TCGTTGCGCG GCAGCGATTC CGATCTCTGG GAATGGCACC GAGATACCCA GAGCTTTTAC
CTCGATAACC GCGGTTCTGT GCTTGGCAGC CACGCCAATG AGATAGTTGC GACCCTAGAG
ACGCTTCCAG TCCACCCTGA GGATAGGGGT AAAGCCTTAG CTCAGTGGAA CAGTATGCTG
GCGGGGGAAA TTGACAGATT TGAGGCTGAA TATCGTTATC AGCGTCGCAG TGGTAATTGG
GGCTGGTTAA GGGTGCGCGG GCGTCCTGTG GCTCGTAATA AACAAACCCA AGTTATTGAG
CGGGTAGCGG GTATTTATAG TGATATTACC TTACAGCGTC AGCTAGAGGA TGAAATCAAT
CTCCTCGCTC AAGCCTTTGA GAATACCTCC GAGGGGGTGT TGATCTTAGA CGTGGATGAA
AACATTCGGG TGGCGAACCA TGCGGCGCAG CAAATTATAG GTTCGGAGCA GCATAATCTT
GTTGGCCAAT CATTTTCCCA ATTTGTGCAA ATGAAGGATG GCCTATCGGC GGAAGTACAT
CAGTTACTCG GTCAAGACAG TTCGTGGACG GGGGAACGTG AGTTAGTGGG GCAGAATGGG
GTGATTTGCC CCGTATGGCT TAACGTCTCT GTGATGCAAT CTGCTAGCGA TAGTTCACTG
CATTATGTCA TTGTATTTTC AGATATCACC GAGCGGAAAC GTACCGAGGC GGACTTAAGA
CGACTGGCTA ATTATGATGT GTTAACTGGA TTGCCGAACC GCTCTTTATT TTCTTCTAGG
TTATTACAGT CGATACAAAT GGCGCAGCAA AGCGGTGAAA AGCTGGCGTT GTTATTTTTG
GACCTTGATC GATTTAAGCA TGTTAACGAC TCCTACGGCC ACAGTATGGG CGATGCCTTG
TTGGTTGAAG CTTCAAACCG CTTGCAGTCT TGTATCGGCA GTGAGCATTT ATTGTGTCGT
TTTGGCGGCG ATGAGTTTGT AATCCTGCTT AGAAACGCTA ACAATCTCAA TGAAATTAAC
CATATTGCCG AGCGATTACT CGCGCAAATT GTCGCGCCAT TCAAATTGTT TGGTCGGGAG
TTTTACATTT CGACCAGTAT CGGCATCAGT ATTTGGCCCG ATGATGCGGT GCAGCCCGAA
GCCTTTATTA AAAATGCCGA CCTGGCCATG TACCACGCCA AGGAAGAAGG GCGCGGCAAC
TTTAAATATT ATTCCTCGGA GCGCAATGCC CAAGCCTTAT ATCATTTACG CTTGGAGGCG
GATTTACGTA AGGCCATCGA GCGGGAAGAG TTTGAACTCT ATTACCAGCC GCAAATTGAT
ATCTTACGGG GCGATAAATT TATTGGGATG GAAGCCTTAA TTCGTTGGCG CCATCCTAAG
GAAGGTTACA TCCGTCCCGA TATTTTTATT AAGGTCGCCG AAGCTTGTGG TTTAGTGGTT
GAAATCGACC GCTGGGTATT TCGTCGAGCC TGTTTAGACG GTGCTAAATG GGTAAAACGT
TGTGCCACAC AGTTTAAATT GTCGGTGAAT ATTTCGGCGG TACATTTCCG CCAGCCAGAT
TTTATTGACG GCATAAAGAA AATTTTGGCC GATACACAAA TGCCGGCTTC ATCCCTCGGG
TTAGAAATCA CCGAAGGGGT GTTGATGAAG GAAGTGCAAG CGGCGAAAAG TCACCTTACT
CAGCTTAAAG AATTGGGGAT TGAAGTCGCT ATCGACGACT TTGGCACTGG CTATTCTTCT
TTGGCATATT TACGTCATTT TGATGTGAAC ACATTAAAGA TCGACCGCTC ATTCTTAATT
GATATCGCCA CCAACTCTGC GGATCAGGCC ATTGTCAGTA GTATTATTGA GCTGGCTCGT
AACTTAAAAT TAACCGTAGT AGCTGAAGGA GTCGAAACCG TTGAGCAGTT GGAGCAAGTC
TTTAGCCGCG GTTGTTATAT TGTGCAGGGC TATTACTTTG CAAAACCTAT GTCGGTCACT
GACTTTGAGC GGTATTTATT GCAAAAATGT ACGTTGAGCT CTTAA
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| Protein sequence | MYEVSHQMQT RISKTLLACF ILFVSGLNMV WAGGFVQRVF TDRDGLAATS IRGLTLDDHG
FIWAATEQGL YRVSNSKVRR IDKTGSESRL ADDFLNSVVN VGQDKLLVST NAALYLYDIR
NNQFTLFGSP DLFPHFPGGA MLSAARMDAQ HWLLLIDNGQ IYQYSPTTSE LTLVTQLAVN
RDLPWRKLLV LPNEQILLAG QFDLLLLDKT GKTLSKYPWT ESMGSILDML EDTKHRVWLA
TSRGVYRFDP SSQQLEAVAE LPDWSTVIVE DPKGALWFAS RFGLLKWSPE THQIESYQEE
LKKQANMEIL KAMLFDDSGL MWVGGSGDGL ALLASQPDFI LETYTADKPY ALSDAMIWSI
LAAPEGLWFG SSNVMFIAKD TQQAIDIPIE GLLSHESIYD IRAFSEHYLL VSTTSGLFVV
DRTTLKGQSF AQWINGQDEF KNKLVYRTYI DPLLKGRVWI ASSNGLYFWE LGLKAPQAFN
IDKLSEGDVE PKRPAIRTLY RASDGKLWIG GKRVFGYLDE ANEFHDQRSL FNGLSAMPTV
SHIEEMSPGI MWFGSYEKGL FEYHLNSSEL VSLTALWQVS CSSVFFIQKT PKANLVACAD
SLIRQDIATG HIEMFNQLDG LISDEMNEGA YFYSPELGLY LGTPDGVMHL DVDKLTNRIT
DDHVMLESVS VYYDNSTEVS LLPQPMMQIK PDASMVSLQI TNLDYLDDSP IQFKYRLRYQ
GEDDNYVLLQ GESQINLAGL AAGEYGLEIL SQVNGIWSDK PFVYPFYVEQ HWWLTQGFKG
ILLLVFSIIA LSLAWYRQRQ VRTFMAMNQA LTESDDRLRQ SLRGSDSDLW EWHRDTQSFY
LDNRGSVLGS HANEIVATLE TLPVHPEDRG KALAQWNSML AGEIDRFEAE YRYQRRSGNW
GWLRVRGRPV ARNKQTQVIE RVAGIYSDIT LQRQLEDEIN LLAQAFENTS EGVLILDVDE
NIRVANHAAQ QIIGSEQHNL VGQSFSQFVQ MKDGLSAEVH QLLGQDSSWT GERELVGQNG
VICPVWLNVS VMQSASDSSL HYVIVFSDIT ERKRTEADLR RLANYDVLTG LPNRSLFSSR
LLQSIQMAQQ SGEKLALLFL DLDRFKHVND SYGHSMGDAL LVEASNRLQS CIGSEHLLCR
FGGDEFVILL RNANNLNEIN HIAERLLAQI VAPFKLFGRE FYISTSIGIS IWPDDAVQPE
AFIKNADLAM YHAKEEGRGN FKYYSSERNA QALYHLRLEA DLRKAIEREE FELYYQPQID
ILRGDKFIGM EALIRWRHPK EGYIRPDIFI KVAEACGLVV EIDRWVFRRA CLDGAKWVKR
CATQFKLSVN ISAVHFRQPD FIDGIKKILA DTQMPASSLG LEITEGVLMK EVQAAKSHLT
QLKELGIEVA IDDFGTGYSS LAYLRHFDVN TLKIDRSFLI DIATNSADQA IVSSIIELAR
NLKLTVVAEG VETVEQLEQV FSRGCYIVQG YYFAKPMSVT DFERYLLQKC TLSS
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