| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0400 |
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| Symbol | |
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| ID | 4251733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 446079 |
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| End bp | 447047 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638116959 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_732537 |
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| Protein GI | 113968744 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000147464 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATTG GACCCTATCA ACTGAAGAAT CAGCTGATCG TGGCACCAAT GGCAGGTGTC
ACCGATCAAG CTTTCCGTAA TCTCTGTCTT CGTTATGGCG CAGCCTTAGC GGTGTCGGAG
ATGCTTTCAT CGAATCCTGA AGTTTGGGAC ACAGATAAGA GCCGCCAGCG TATGACGCAT
TCCGGCGAGG AAGGTATTCG CTCAGTGCAA ATTGCAGGTG CAGATCCAGA GTTAATGGCG
CAGGCCGCCC AGTTCAACGT CGAACAAGGT GCCCACATCA TTGATATCAA CATGGGATGC
CCGGCAAAAA AAGTGAATAA AAAGCTGGCA GGTTCTGCCC TAATGCAAAA TCCACCCTTA
GTGAAAGAAA TTTTACAAGC CGTGGTCGCT GCAGTAGAGG TGCCTGTCAC GTTAAAGATT
CGCACAGGCT GGGAGCCTGA ACACAGGAAC GGTGTTCAAA TCGCCCAGAT TGCAGAGGAT
TGTGGTATCG CCTCGCTCGC CGTTCACGGC CGCACGAGAC AATGCATGTA CAGAGGCGAC
GCCGAGTACG ACACCATCAA AGCAATTAAA CAGAATGTCT CGATTCCTGT TGTCGCGAAT
GGGGATATCG ACAGTCCGGA GAAAGCCCGC TTCGTGCTGG ACTATACCGG TGTCGATGCT
CTGATGATAG GACGGGGTGC TCAAGGACGG CCTTGGATTT TCAGAGAAAT CCAGCACTAC
TTGGATACGG GTAATAAGCT AGCGCCCATT GAGGTGGCTG AACAGCGTCA AGTGATGCTG
GAACACCTCA CCAAACTTTA TGATTTGTAT GGTGAATATA AGGGTATCCG CTTCGCCAGA
AAGCATATTG GATGGTACCT AGACCAAGAG GATCAGCGCC AATTTCGGGC TGACTTTAAT
CAGCTGGAAA CCGCTGCAGA ACAGTATTCC CTGGTGGAAT ATTATTTTGA TGAATTAGTA
CAGAATTAA
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| Protein sequence | MQIGPYQLKN QLIVAPMAGV TDQAFRNLCL RYGAALAVSE MLSSNPEVWD TDKSRQRMTH
SGEEGIRSVQ IAGADPELMA QAAQFNVEQG AHIIDINMGC PAKKVNKKLA GSALMQNPPL
VKEILQAVVA AVEVPVTLKI RTGWEPEHRN GVQIAQIAED CGIASLAVHG RTRQCMYRGD
AEYDTIKAIK QNVSIPVVAN GDIDSPEKAR FVLDYTGVDA LMIGRGAQGR PWIFREIQHY
LDTGNKLAPI EVAEQRQVML EHLTKLYDLY GEYKGIRFAR KHIGWYLDQE DQRQFRADFN
QLETAAEQYS LVEYYFDELV QN
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