| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0378 |
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| Symbol | |
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| ID | 4251939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 406591 |
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| End bp | 408510 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638116937 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_732515 |
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| Protein GI | 113968722 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0227071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTGT TTAGACAGAT ATATTCGCTG CTTTTTAGCC TGTTCTTGCT GGTTGTTGCA
AGCCTTGGCT ATGTGCAATT TACTGAGACA CAAAGCTTTT TGACCAAGCA AATGGAATCG
GATCTAAACA ATACCAGTAC CTCGCTTGGA CTCATGCTTA CTCCAGCACT GCAAGCAGGC
GATACCGCCG CAGCCGAAAC CTTAGTCAAT GTGATTTTTG AGGGCGGCTA TTACAAAAAC
ATTAAGCTGA CTTGGATGGT TGATGGCAAA CAACAAGAAT GGAACAACCC ACTCAAAATT
GAAGACGTGC CTCAATGGTT CATCAATCTC AACCTGTTTA AAACCATCAA AAAAGAAAGC
ACTATTACTT CGGGATGGTT ACAACTCGCA CAACTAGAAA TCACCGCGCA CCCAGGTTTT
GGTTACCATG AATTATGGCG CATTATGTCT AATACCATTA TCGCCTTCTC ATTGCTCTTT
TTAGTCGCCA TTTTTACCGC AAGATTAGGC TTAACCTGGA TCTTAAAACC ACTGCATGCC
TTATCTGATC ATGCCAAAAA GATTGCGGCT CGCCAGTTTG GTCCCGATAT GCCGCTGCCC
AAGACCACTG AGCTCAAGGA CTTGGTTACC GCATTCAACA GCATGTCAGC CCAGCTCAAG
CAATTGTTCC AATCACTTGA TGAAGAAGTC GGCTCTTTAC GCAAAAAGAA CCTCACCGAC
CCCGCCTCTG GACTGCCTAA TCGCCAATAC GTAGTCAGCC GCCTCAACGG CTGGTTAAGT
GAACCGAGCA GCGGTGCCCT TTTCTTAGCT AAGCTCGATT GGCTCGAGGA GGTACACAGT
AAATATGGCT ATCAGGTTCG GGATGAAACC ATTCGCCTGT TGGCCGAAAA ACTGGTCGAG
CAACTCAATG AGATCACCCC ATCCGTCGTG GCGCGTATTG CCGCATTTGA ATTTGCGTTC
CTCGTTACCG ATGTCGAACA CGATCAAATC AGTAAGTACC TGCAAACCCT GATCCGCACC
ATCAACCAAG AGATCTCTAA AGCAGGCTGT AAGCCCAATG AGAACTTTGC CATCGGTGTT
GCTGAACGCA TCGGTCAAAT GAAGGTGTCA GATATTCTGG CGCAGGCGGA TAACGCGCTG
CAAAAAGCGC TGAAAGAACA TAAGTCTTTC CATTGGTTTG AAACCACAGA GCAACAGCTA
TTCACTAGAG AGCAGTGGCG CGACAACTTA AGCCATGCCA TCAGCAATAA GAAGTTTAAG
TTCCGCTGGC AACCCATCCA ATTTTGTAAT GGGGAAGGTG TTGCACAGCG AGAACTCTAC
TGCCAACTTG AACTTGGCGA TAAGGTGGCC CATGCAGGCC AGTTTATGCC TTATATCGAG
CTACTGTCAC TCGGCTCGCT GCTCGATAAA TGCCTGATTG AGACTGTGAA TGAGCATAAA
TTGCTTGAGC GTAACTATGA ACCACTGGCA ATCAACCTGA CACATCAGAG CCTTAGTGAT
ACTCAATTCC ACGACTGGCT CAATCACTTC TTGCGCAGCA TGCCACAGGT AGAACGTATA
TGCTTTGAAA TCCCCGAAGC AGGCGTCTAC AGCGATTTAG AATCCTGTGT GCAGCTATGT
AATATCATTC GTGATAATGG TGCTAAGTTT GGTATCGACC ACTTTGGTCG CCAATTTGGA
TCTATGTCGT ACCTTCAAGA GCTAAGACCG AGTTACGTGA AACTCGATCA ATCCTTCTCC
TACTATGACG AAGCCTCACA TAATAGCGAG CTCTGCCGCG CCATTATCAA TGTGGCCAAA
GGATTGGATA TTCAGGTGAT AGTGACTGGT ATCCAAGAGA AAGCGCAGTT AGAACGATTT
AATGAGCTTA AAACTGACGC CTATCAAGGC TTTATAGTAC CGCCAGAGAA TATCGACTAA
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| Protein sequence | MTLFRQIYSL LFSLFLLVVA SLGYVQFTET QSFLTKQMES DLNNTSTSLG LMLTPALQAG
DTAAAETLVN VIFEGGYYKN IKLTWMVDGK QQEWNNPLKI EDVPQWFINL NLFKTIKKES
TITSGWLQLA QLEITAHPGF GYHELWRIMS NTIIAFSLLF LVAIFTARLG LTWILKPLHA
LSDHAKKIAA RQFGPDMPLP KTTELKDLVT AFNSMSAQLK QLFQSLDEEV GSLRKKNLTD
PASGLPNRQY VVSRLNGWLS EPSSGALFLA KLDWLEEVHS KYGYQVRDET IRLLAEKLVE
QLNEITPSVV ARIAAFEFAF LVTDVEHDQI SKYLQTLIRT INQEISKAGC KPNENFAIGV
AERIGQMKVS DILAQADNAL QKALKEHKSF HWFETTEQQL FTREQWRDNL SHAISNKKFK
FRWQPIQFCN GEGVAQRELY CQLELGDKVA HAGQFMPYIE LLSLGSLLDK CLIETVNEHK
LLERNYEPLA INLTHQSLSD TQFHDWLNHF LRSMPQVERI CFEIPEAGVY SDLESCVQLC
NIIRDNGAKF GIDHFGRQFG SMSYLQELRP SYVKLDQSFS YYDEASHNSE LCRAIINVAK
GLDIQVIVTG IQEKAQLERF NELKTDAYQG FIVPPENID
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