| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0257 |
|---|
| Symbol | |
|---|
| ID | 4250821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 275266 |
|---|
| End bp | 276681 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638116813 |
|---|
| Product | nitrogen metabolism transcriptional regulator, NtrC, Fis family |
|---|
| Protein accession | YP_732395 |
|---|
| Protein GI | 113968602 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000519324 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATGA GTGAACAAGT GTGGATCCTC GACGATGACA GTTCGATACG TTGGGTGCTC
GAAAAGGCGC TCCAAGGCGC GAAACTCAGC ACCGCCAGCT TTGCCGCGGC CGAATCACTC
TGGCAAGCAT TAGAGATTTC CCAGCCACGA GTCATAGTCT CAGATATTCG TATGCCGGGC
ACCGATGGCT TAACCCTGTT AGAAAGGCTG CAAATCCACT ATCCGCATAT TCCCGTCATC
ATCATGACAG CGCATTCGGA TTTAGACAGT GCCGTCAGCG CCTATCAGGC GGGGGCATTT
GAGTATTTGC CCAAGCCCTT CGATATTGAT GAGGCGATTT CCCTCGTCGA GCGCGCCCTA
ACCCATGCAA CCGAGCAAAG CCCGTCTCCT GCCCCGCAGG AGACGCAAGT CAAAACGCCC
GAAATCATAG GTGAAGCGCC CGCCATGCAG GAGGTATTTC GTGCCATCGG CCGGTTATCA
CGATCCTCAA TCAGCGTGCT GATCAACGGC CAATCGGGTA CGGGTAAAGA GCTGGTTGCA
GGCGCATTGC ACAAACACAG CCCGCGTAAG GATAAGCCCT TTATCGCCTT GAATATGGCG
GCAATTCCCA AAGACTTAAT CGAATCTGAA CTCTTTGGCC ATGAGAAAGG CGCCTTCACC
GGCGCAGCAA ACGTGCGCCA AGGACGCTTC GAGCAAGCCA ATGGCGGCAC CCTGTTTTTA
GATGAAATAG GCGATATGCC GCTGGACGTG CAAACCCGCC TACTGCGGGT GCTCGCCGAT
GGGCAATTTT ATCGCGTCGG CGGCCATAGC GCCGTCCAAG TGGATGTGCG CATTATTGCC
GCTACTCACC AAGATCTGGA GCAACTCGTG CTCAAAGGGG GATTTAGGGA AGACCTATTC
CATCGGCTCA ATGTTATCCG CGTCCACTTG CCGCCGCTGT CACAACGCCG AGAGGATATT
CCCCAACTCG CGACCCACTT TTTAGCCTCC GCCGCTAAGG AGATTGGTGT CGAGGCAAAA
ATCCTCACCA AAGAGACCGC CGCCAAGCTA TCGCAACTGC CTTGGCCAGG AAACGTGAGA
CAACTCGAGA ATACCTGTCG CTGGCTCACG GTAATGGCCT CAGGGCAAGA AATCCTGCCC
CAGGATTTAC CCCCAGAGCT ACTTAAAGAG CCCGCCAGTA TTAATCCTAT GGCAAAAGGC
AGCCAAGATT GGCAATCGGC ACTCACAGAG TGGATTGACC AAAAACTGTC TGAGGGAAAT
AGCGATTTAT TAACTGAAGT TCAGCCGGCC TTTGAACGTA TTTTGCTCGA AACCGCATTA
CGCCATACCC AAGGACATAA ACAAGAAGCG GCAAAACGTT TAGGTTGGGG AAGAAATACC
TTAACGCGAA AATTGAAAGA ATTGTCTATG GATTAA
|
|---|
| Protein sequence | MRMSEQVWIL DDDSSIRWVL EKALQGAKLS TASFAAAESL WQALEISQPR VIVSDIRMPG
TDGLTLLERL QIHYPHIPVI IMTAHSDLDS AVSAYQAGAF EYLPKPFDID EAISLVERAL
THATEQSPSP APQETQVKTP EIIGEAPAMQ EVFRAIGRLS RSSISVLING QSGTGKELVA
GALHKHSPRK DKPFIALNMA AIPKDLIESE LFGHEKGAFT GAANVRQGRF EQANGGTLFL
DEIGDMPLDV QTRLLRVLAD GQFYRVGGHS AVQVDVRIIA ATHQDLEQLV LKGGFREDLF
HRLNVIRVHL PPLSQRREDI PQLATHFLAS AAKEIGVEAK ILTKETAAKL SQLPWPGNVR
QLENTCRWLT VMASGQEILP QDLPPELLKE PASINPMAKG SQDWQSALTE WIDQKLSEGN
SDLLTEVQPA FERILLETAL RHTQGHKQEA AKRLGWGRNT LTRKLKELSM D
|
|---|
| |