| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0240 |
|---|
| Symbol | |
|---|
| ID | 4251014 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 260725 |
|---|
| End bp | 261387 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638116796 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_732378 |
|---|
| Protein GI | 113968585 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000039366 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTAC TCCTAATTGA AGATGATACT GACTTAGTGG CTCGCCTCAT CCCCGCCCTT
AACAAGGCGG GCTACACGGT TGAACATGCC AATAATGGTA TCGATGGCGC TTTTCTGGGT
GAGGAAGAAG CCTTCGAGGC GGTGATCCTC GATTTAGGCT TGCCCGGAAA GCCAGGCTTA
AGCGTACTGA GCCAATGGCG CCAAAAGGGC CTGTTGATGC CAGTGTTAAT TCTTACGGCT
CGCGATGCTT GGCACGAACG CGTCGATGGC CTAAAGGCCG GCGCCGATGA TTATCTCGGT
AAACCTTTCC ATGTTGAGGA GCTGCTCGCC AGATTAGAAG CGCTGATCCG CCGCCACTTT
GGCCGCGCCG ATAATCTGCT GCAACATGCG GGCGTCTCCC TCGATGTGGA TAAACAAGCG
GTGACCAATG CAGAAGGGGA CGTTATCGAG CTGACTAAGA TTGAGTATCG CCTGCTGCAT
TATTTAATGG CCAACCCGAC TAAGATTGTC TCCAAATCCG AGTTGAGTGA GCGCATTTAC
GAAGAGGAAC AAATCAAAGA CAGCAATGTG ATTGAAGTGT ATGTCAACCG ACTCCGCCAA
CGCCTAGGTA AAGACTATAT CGAGACGCGG CGCGGCCAAG GTTATCGACT CAAGGATGCA
TAA
|
|---|
| Protein sequence | MRLLLIEDDT DLVARLIPAL NKAGYTVEHA NNGIDGAFLG EEEAFEAVIL DLGLPGKPGL
SVLSQWRQKG LLMPVLILTA RDAWHERVDG LKAGADDYLG KPFHVEELLA RLEALIRRHF
GRADNLLQHA GVSLDVDKQA VTNAEGDVIE LTKIEYRLLH YLMANPTKIV SKSELSERIY
EEEQIKDSNV IEVYVNRLRQ RLGKDYIETR RGQGYRLKDA
|
|---|
| |