Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0234 |
Symbol | |
ID | 4251008 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 249336 |
End bp | 251315 |
Gene Length | 1980 bp |
Protein Length | 659 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638116786 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_732372 |
Protein GI | 113968579 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF [TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00466209 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000673434 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGATCCCAG AACTTGGACA CTTTTCGCTG ATTATAGGAG TGGCATTCGC CTTCTTATTA ATCAGCGTTC CCCTTATAGG TGTTGCCCGT AAAGACCAAT ATCTAGTGAG GTATGCTTGG CCGTTAACCT ACGGAATGTT CTTCTTTATC GCTTTATCCG TAGTATCTCT TGGTTACAGC TTTGCCGTTG ATGACTTCTC CGTTGCCTAT GTGGCACATC ACTCGAATTC CCAGTTACCT ATCTTCTTTA AGATTGCGGC CGTATGGGGC GGTCATGAAG GGTCGCTGCT GTTCTGGGTG TTTGCACTAT CGACGTGGGC GGCTTCAGTT GCCTTATTCA GTAAAGGCTT AGAAGAAGTG TTCACTGCTA GGGTACTGGC GGTACTGGCA TTGATCGTGA TTGGCTTCAG CTTATTTATG CTCCTCACAT CTAGCCCATT TGAACGCTTA TTTCCAATGC CTGCCGAAGG TCGCGACTTA AACCCAATGC TGCAGGACGT GGGCTTAATC TTCCATCCTC CAATGCTGTA CTTAGGTTAT GTTGGTTTCT CGGTGAGCTT TGCCTTCGCG ATTGCAGCTC TTATGAGTGG TCACCTTGAT TCTGCGTGGG CGCGTTGGTC ACGTCCTTGG ACCTTAGCTG CTTGGATTTT CCTCACGGGC GGTATTGCAT TAGGTTCTTG GTGGGCATAC TACGAATTAG GCTGGGGTGG CTGGTGGTTC TGGGATCCCG TTGAAAACGC CTCCTTTATG CCTTGGTTAG TGGGTACTGC ATTAGTGCAT TCACTGATCG TGACCGAAAA ACGCGGTGCT TTCCGCAACT GGACCGTCTT ACTGTCTATC TTCGCTTTCT CATTAAGCTT ACTCGGTACC TTTATCGTAC GTTCGGGTGT ACTGACTTCA GTGCACTCCT TCGCAGCCGA TCCAAGCCGC GGTATGTTTA TTCTGTTGCT GCTTGGTTTA GCCATCGGCG GGTCGCTCAC GCTGTTTGCC TTCCGCGCCA GCGAAATGAG CAGCCCGGCT CGTTTCGAGC TGAAATCAAA AGAAACCATG CTGTTAGTCT GTAACGTGTT ACTCACGGTT GCAGCGGGTA CTGTTCTGTT AGGTACTTTA TACCCACTGC TGATCGATGC ATTAGGCATG GGTAAGATTT CTGTTGGACC TCCATACTTC AACGCTGTGT TTGTGCCTAT CGTTCTCGTA CTGTTTGGCT TCATGGGCGT TGGTCCAATC ATTCGTTGGA AGAAATCCAA AGCTGGTGAG CTCAAGCGCC AATTGCTGGT GCCTGCATTA GTGTCAGCCG CAATTGGTAT CGTGACACCA TTTATTGTCG ATGGTGCCTT TAACACTTGG GTTGCCTGTG GTATCGCCGC GGCCGCTTGG ATTGTGTTGG CAACCGCAAG AGCTGCTTAC AATATCGTTA AGCCAAAAGA CGGTGAATTA AGCATGGCGC GTATGGGGCG TAGCCAATTG GGTATGATTT TGGCCCACTT AGGTATTGCC GTGTCAGTGA TCGGTGCCAC TATGGTGTCG AACTACTCGA TTGAGAAGAG TGTGCGTATG GGGCCTGGTG TGAGCCAAGA GCTTGCGGGT TACACCTTTA AGTATCTCGA AACTAAGAAC GTTGTCGGTC CTAACTACAC CGCACAACAA GGTCAAATTG AGATTTATAA AGGCGATAAA CTGCTGACCT TACTCAAGCC CGATCGTCGC CAATACAATG TGCGTACCAT GGATATGACC GAAGCCGGTA TCGATTGGGG TCTGTTCCGT GACTTATATG TCACCATGGG CGATCCAATC AGCAGCACTG AATTTGCTGT GCGCTTGAAC TACAAACCTT TTGTTCGTTG GTTATGGTTT GGAGCAATAT TCATGATGGT CGGTGGTTTC TTTGCCGCAT CGGATAAACG CTATCGCTCA AAAGTGGCCG CTACGGTTAA GCCACAAGCT GAAAAAGCGA AATTAGCTAC CGCGCAATAA
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Protein sequence | MIPELGHFSL IIGVAFAFLL ISVPLIGVAR KDQYLVRYAW PLTYGMFFFI ALSVVSLGYS FAVDDFSVAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FALSTWAASV ALFSKGLEEV FTARVLAVLA LIVIGFSLFM LLTSSPFERL FPMPAEGRDL NPMLQDVGLI FHPPMLYLGY VGFSVSFAFA IAALMSGHLD SAWARWSRPW TLAAWIFLTG GIALGSWWAY YELGWGGWWF WDPVENASFM PWLVGTALVH SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMSSPA RFELKSKETM LLVCNVLLTV AAGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIVLV LFGFMGVGPI IRWKKSKAGE LKRQLLVPAL VSAAIGIVTP FIVDGAFNTW VACGIAAAAW IVLATARAAY NIVKPKDGEL SMARMGRSQL GMILAHLGIA VSVIGATMVS NYSIEKSVRM GPGVSQELAG YTFKYLETKN VVGPNYTAQQ GQIEIYKGDK LLTLLKPDRR QYNVRTMDMT EAGIDWGLFR DLYVTMGDPI SSTEFAVRLN YKPFVRWLWF GAIFMMVGGF FAASDKRYRS KVAATVKPQA EKAKLATAQ
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