| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0234 |
|---|
| Symbol | |
|---|
| ID | 4251008 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 249336 |
|---|
| End bp | 251315 |
|---|
| Gene Length | 1980 bp |
|---|
| Protein Length | 659 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638116786 |
|---|
| Product | cytochrome c-type biogenesis protein CcmF |
|---|
| Protein accession | YP_732372 |
|---|
| Protein GI | 113968579 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1138] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00466209 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000000673434 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCAG AACTTGGACA CTTTTCGCTG ATTATAGGAG TGGCATTCGC CTTCTTATTA
ATCAGCGTTC CCCTTATAGG TGTTGCCCGT AAAGACCAAT ATCTAGTGAG GTATGCTTGG
CCGTTAACCT ACGGAATGTT CTTCTTTATC GCTTTATCCG TAGTATCTCT TGGTTACAGC
TTTGCCGTTG ATGACTTCTC CGTTGCCTAT GTGGCACATC ACTCGAATTC CCAGTTACCT
ATCTTCTTTA AGATTGCGGC CGTATGGGGC GGTCATGAAG GGTCGCTGCT GTTCTGGGTG
TTTGCACTAT CGACGTGGGC GGCTTCAGTT GCCTTATTCA GTAAAGGCTT AGAAGAAGTG
TTCACTGCTA GGGTACTGGC GGTACTGGCA TTGATCGTGA TTGGCTTCAG CTTATTTATG
CTCCTCACAT CTAGCCCATT TGAACGCTTA TTTCCAATGC CTGCCGAAGG TCGCGACTTA
AACCCAATGC TGCAGGACGT GGGCTTAATC TTCCATCCTC CAATGCTGTA CTTAGGTTAT
GTTGGTTTCT CGGTGAGCTT TGCCTTCGCG ATTGCAGCTC TTATGAGTGG TCACCTTGAT
TCTGCGTGGG CGCGTTGGTC ACGTCCTTGG ACCTTAGCTG CTTGGATTTT CCTCACGGGC
GGTATTGCAT TAGGTTCTTG GTGGGCATAC TACGAATTAG GCTGGGGTGG CTGGTGGTTC
TGGGATCCCG TTGAAAACGC CTCCTTTATG CCTTGGTTAG TGGGTACTGC ATTAGTGCAT
TCACTGATCG TGACCGAAAA ACGCGGTGCT TTCCGCAACT GGACCGTCTT ACTGTCTATC
TTCGCTTTCT CATTAAGCTT ACTCGGTACC TTTATCGTAC GTTCGGGTGT ACTGACTTCA
GTGCACTCCT TCGCAGCCGA TCCAAGCCGC GGTATGTTTA TTCTGTTGCT GCTTGGTTTA
GCCATCGGCG GGTCGCTCAC GCTGTTTGCC TTCCGCGCCA GCGAAATGAG CAGCCCGGCT
CGTTTCGAGC TGAAATCAAA AGAAACCATG CTGTTAGTCT GTAACGTGTT ACTCACGGTT
GCAGCGGGTA CTGTTCTGTT AGGTACTTTA TACCCACTGC TGATCGATGC ATTAGGCATG
GGTAAGATTT CTGTTGGACC TCCATACTTC AACGCTGTGT TTGTGCCTAT CGTTCTCGTA
CTGTTTGGCT TCATGGGCGT TGGTCCAATC ATTCGTTGGA AGAAATCCAA AGCTGGTGAG
CTCAAGCGCC AATTGCTGGT GCCTGCATTA GTGTCAGCCG CAATTGGTAT CGTGACACCA
TTTATTGTCG ATGGTGCCTT TAACACTTGG GTTGCCTGTG GTATCGCCGC GGCCGCTTGG
ATTGTGTTGG CAACCGCAAG AGCTGCTTAC AATATCGTTA AGCCAAAAGA CGGTGAATTA
AGCATGGCGC GTATGGGGCG TAGCCAATTG GGTATGATTT TGGCCCACTT AGGTATTGCC
GTGTCAGTGA TCGGTGCCAC TATGGTGTCG AACTACTCGA TTGAGAAGAG TGTGCGTATG
GGGCCTGGTG TGAGCCAAGA GCTTGCGGGT TACACCTTTA AGTATCTCGA AACTAAGAAC
GTTGTCGGTC CTAACTACAC CGCACAACAA GGTCAAATTG AGATTTATAA AGGCGATAAA
CTGCTGACCT TACTCAAGCC CGATCGTCGC CAATACAATG TGCGTACCAT GGATATGACC
GAAGCCGGTA TCGATTGGGG TCTGTTCCGT GACTTATATG TCACCATGGG CGATCCAATC
AGCAGCACTG AATTTGCTGT GCGCTTGAAC TACAAACCTT TTGTTCGTTG GTTATGGTTT
GGAGCAATAT TCATGATGGT CGGTGGTTTC TTTGCCGCAT CGGATAAACG CTATCGCTCA
AAAGTGGCCG CTACGGTTAA GCCACAAGCT GAAAAAGCGA AATTAGCTAC CGCGCAATAA
|
|---|
| Protein sequence | MIPELGHFSL IIGVAFAFLL ISVPLIGVAR KDQYLVRYAW PLTYGMFFFI ALSVVSLGYS
FAVDDFSVAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FALSTWAASV ALFSKGLEEV
FTARVLAVLA LIVIGFSLFM LLTSSPFERL FPMPAEGRDL NPMLQDVGLI FHPPMLYLGY
VGFSVSFAFA IAALMSGHLD SAWARWSRPW TLAAWIFLTG GIALGSWWAY YELGWGGWWF
WDPVENASFM PWLVGTALVH SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS
VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMSSPA RFELKSKETM LLVCNVLLTV
AAGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIVLV LFGFMGVGPI IRWKKSKAGE
LKRQLLVPAL VSAAIGIVTP FIVDGAFNTW VACGIAAAAW IVLATARAAY NIVKPKDGEL
SMARMGRSQL GMILAHLGIA VSVIGATMVS NYSIEKSVRM GPGVSQELAG YTFKYLETKN
VVGPNYTAQQ GQIEIYKGDK LLTLLKPDRR QYNVRTMDMT EAGIDWGLFR DLYVTMGDPI
SSTEFAVRLN YKPFVRWLWF GAIFMMVGGF FAASDKRYRS KVAATVKPQA EKAKLATAQ
|
|---|
| |