| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0229 |
|---|
| Symbol | |
|---|
| ID | 4250687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 244878 |
|---|
| End bp | 245624 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638116781 |
|---|
| Product | heme exporter protein CcmC |
|---|
| Protein accession | YP_732367 |
|---|
| Protein GI | 113968574 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component |
|---|
| TIGRFAM ID | [TIGR01191] heme exporter protein CcmC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0706055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000000357328 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGTGGAAAT GGTTACACCC TTACGCGGAT CCTGAACGCG CTTACAAATT ATCAGGAACG
TTATTTCCAT GGTTTGCTAC CCTAGCCTGT CTTTTTATTA CCGTAGGCAC CGTTTGGGGA
TTGATGTTTG CCCCAACAGA TTACCAACAG GGTGATAGCT ACCGTATCAT CTTTATCCAC
GTTCCAGCCG CTTCTATGTC GATGGCAGCT TATATGGGGA TGGCGACAGC GGCATTTATC
GGTTTAGTCT GGCAAGTTAA ACTGGCAGAC TGGGCAGCCG CTTCTATTGC GCCTATCGGT
GCAGTAATCA CCTTTATTGC CCTCTTTACT GGTGCCGCTT GGGGTAAACC CATGTGGGGC
ACTTGGTGGG TATGGGATGC GCGTCTGACC TCTGAATTAG TACTACTATT CCTCTACTTA
GGTGTGATTT CACTCTACGC TTCTTTTGAG GATAAAGTTC TCGCCGCGCG TGCAGCAGGG
ATCTTAGCGA TCGTTGGCGT GATCAACATT CCGATCATCA AATACTCAGT GGAATGGTGG
AGCTCACTGC ACCAACCCTC CACCATTAAA ATTACCTCTA AATCGACTAT GTCGAGTGAA
ATGTTGTACC CACTTTTAAT CAATATTTTA GGTTTCGGCC TTATGATAGG GGCTATCACT
ATTGTGAGAT TTAGAGCAGA AATCTTAGCA AGAAACGGCA TGCGCCCCTG GGTGCGTGAA
CTTGCCAAAG CTGAGGAGGT CAAATAA
|
|---|
| Protein sequence | MWKWLHPYAD PERAYKLSGT LFPWFATLAC LFITVGTVWG LMFAPTDYQQ GDSYRIIFIH
VPAASMSMAA YMGMATAAFI GLVWQVKLAD WAAASIAPIG AVITFIALFT GAAWGKPMWG
TWWVWDARLT SELVLLFLYL GVISLYASFE DKVLAARAAG ILAIVGVINI PIIKYSVEWW
SSLHQPSTIK ITSKSTMSSE MLYPLLINIL GFGLMIGAIT IVRFRAEILA RNGMRPWVRE
LAKAEEVK
|
|---|
| |