Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0156 |
Symbol | |
ID | 4250878 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 177691 |
End bp | 179793 |
Gene Length | 2103 bp |
Protein Length | 700 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638116699 |
Product | general secretion pathway protein D |
Protein accession | YP_732294 |
Protein GI | 113968501 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00486082 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATAACA AACGGATTCG ACGCAAACTG ATTGCTGGAG TTGTGGCTGG CGCCACTATG CTGACCTCGC AATTTGTTTG GTCTGAACAA TATGCGGCCA ACTTTAAAGG CACTGATATC CAAGAGTTTA TCAACATTGT TGGTAAAAAC CTGAATAAAA CCATCATTGT TGACCCGACC ATTCGCGGCA AGATCAACGT GCGCAGTTAT GATCTGCTCA ACGATGAGCA GTATTACCAA TTCTTCCTCA ACGTGCTGCA AGTGTACGGT TATGCCATCG TCGAGATGGA AAACAACGTC ATTAAAGTCA TTAAAGACAA AGATGCTAAA ACCGCGGCGA TTCGTGTTGC TAACGACAAC GACCCAGGTT TAGGTGATGA AATGGTCACC CGCATCGTGG CGCTGTACAA CACCGAAGCC AAGCAATTAG CACCGTTATT ACGTCAGTTA AACGATAACG CCGGTGGCGG TAACGTAGTG AACTACGACC CATCGAACGT ACTGATGTTG TCAGGCCGCG CCGCTGTGGT GAACAAGTTA GTTGAAATCG TTCGCCGTGT AGATAAGCAG GGCGATACCT CGGTACAAGT GGTGCCGCTC GAATACGCCT CAGCCGGTGA AATGGTGCGA ATTATCGATA CTCTTTACCG CGCGACAGCT AACCAAGCGC AGCTCCCAGG ACAAGCGCCC AAGGTCGTTG CCGACGAGCG CATTAACGCC GTAGTGGTCA GTGGTGACGA AAAGAGCCGC CAACGCGTGG TTGAGCTTAT CCATCGCCTC GATGCCGAGC AGGCCAGCAC GGGCAATACT AAGGTACGTT ATTTACGTTA TGCCAAGGCT GAAGATTTAG TCGAGGTGCT GACCGGATTT GCGCAAAAGC TTGAGGGTGA AAAAGATCCA AGCGCCCAGG CTGGCGGTAA ACGTCGTAAT GAAATCAATA TTATGGCCCA CACGGATACT AACGCCTTAG TGATCAGCGC CGAGCCAGAT CAAATGCGCA CTATCGAGAG TGTGATTAAC CAACTCGATA TTCGCCGCGC CCAAGTATTA GTCGAAGCCA TTATCGTGGA AGTCGCCGAA GGCGATAACG TCGGTTTTGG TGTGCAATGG GCCGCTAAAG CGGGCGGTGG TACTCAGTTC AATAACTTAG GCCCAACCAT TGGTGAAATT GGCGCCGGTA TTTGGCAGGC ACAGGGAGAA GATGGGACAA CTGTTTGTAC CGAGAATGGC ACTTGTACTG AAAACCCAGA TTCTAGAGGT GATGTGACTT TACTTGCCCA AGCCTTAGGT AAAGTGAATG GTATGGCTTG GGGCGTGGCC ATGGGCGACT TTGGCGCCTT AATACAAGCA GTATCGGCCG ATACCAACTC AAACGTACTG GCGACACCTT CGATTACAAC TCTAGATAAC CAAGAAGCCT CGTTTATCGT CGGTGACGAA GTGCCGATTC TGACCGGTTC TACCGCCAGC TCAAACAACA GTAACCCATT CCAAACCGTT GAACGTAAAG AGGTTGGGGT GAAGTTAAAA GTTGTGCCTC AGATCAACGA AGGCAACGCG GTTAAGCTCG CCATTGAGCA AGAAGTCTCG GGTGTAAACG GTAATACGGG TGTAGATATC TCCTTCGCGA CTCGCCGTTT AACCACCACT GTGATGGCTG ACTCAGGGCA AATCGTGGTA CTCGGTGGTT TGATTAACGA AGAAGTCCAA GAAAGTGTCC AGAAAGTACC ATTCCTCGGT GATATTCCGG TACTCGGACA CTTATTCAAA TCTTCTTCCA GTAAGAAGAC CAAAAAGAAC CTGATGATCT TCATCAAGCC CACCATTATC CGTGATGGTG TGACTATGGA AGGCATCGCA GGCCGTAAAT ACAACTATTT CAGAGCATTA CAACTTGAGC AGCAAGAGCG CGGCGTGAAC CTAATGCCAA ATACTCAAGT GCCAATTCTG GAAGAATGGA ATCAATCTGA ATATTTGCCG CCCGAAGTGA ACGACATTTT AGATCGTTAC AAAGAAGGCA AAGGGTTAGA CACCCAGATG CGTGAAACGG ACTCGACCCT CAAGTCGCTG GATGAAAACA AGAACAAAGA TAAAACACAA TGA
|
Protein sequence | MNNKRIRRKL IAGVVAGATM LTSQFVWSEQ YAANFKGTDI QEFINIVGKN LNKTIIVDPT IRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAIVEMENNV IKVIKDKDAK TAAIRVANDN DPGLGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLML SGRAAVVNKL VEIVRRVDKQ GDTSVQVVPL EYASAGEMVR IIDTLYRATA NQAQLPGQAP KVVADERINA VVVSGDEKSR QRVVELIHRL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AQKLEGEKDP SAQAGGKRRN EINIMAHTDT NALVISAEPD QMRTIESVIN QLDIRRAQVL VEAIIVEVAE GDNVGFGVQW AAKAGGGTQF NNLGPTIGEI GAGIWQAQGE DGTTVCTENG TCTENPDSRG DVTLLAQALG KVNGMAWGVA MGDFGALIQA VSADTNSNVL ATPSITTLDN QEASFIVGDE VPILTGSTAS SNNSNPFQTV ERKEVGVKLK VVPQINEGNA VKLAIEQEVS GVNGNTGVDI SFATRRLTTT VMADSGQIVV LGGLINEEVQ ESVQKVPFLG DIPVLGHLFK SSSSKKTKKN LMIFIKPTII RDGVTMEGIA GRKYNYFRAL QLEQQERGVN LMPNTQVPIL EEWNQSEYLP PEVNDILDRY KEGKGLDTQM RETDSTLKSL DENKNKDKTQ
|
| |