Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0065 |
Symbol | |
ID | 4250944 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 75909 |
End bp | 77129 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638116607 |
Product | major facilitator transporter |
Protein accession | YP_732203 |
Protein GI | 113968410 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0738] Fucose permease |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.596651 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000000729069 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGGTAAGTG ATTCAAATTC TGCAGAAAAT CGCCATCACA CTCGAATTAG AGTGTTGACG TATTTAATGT TTTTTATGTT CGCTATGACC TCAGATGCCG TGGGCGTGAT CATTCCTCAG CTCATTTCTG AGTTTGGCCT CTCTTTATCA CAGGCGAGCG CCTTTCATTA TATGCCGATG ATTTTTATTG CAATAAGTGG TCTATTCCTC GGTTTTTTGG CGGATAAAAT AGGGCGTAAA CTAACCATTT TATTAGGGCT GTTGTTGTTC GCCATTGCCT GTTTTTTATT TGCGCTTGGG GAGTCGTTTT ATTATTTCCT GCTGCTATTG GCCTTGGTGG GCTTGGCAAT AGGGGTATTT AAAACCGGGG CCTTAGCCCT GATCGGTGAT ATTTCTCGGT CGACAAAACA GCATTCCAGC ACCATGAATA CGGTCGAAGG ATTTTTTGGG GTCGGCGCCA TGGTGGGGCC AGCCATTGTC AGCTATCTGC TTATCAGTGG TGTGTCATGG AAGTATTTGT ATTTTGGGGC GGGTGTGTTT TGTCTGCTGC TCTGTTGGTT AGCATTTAGG GCCGATTATC CGCAGGTTAA GCGATCTTCA ACGGAAACAA TTAATCTGAC GAATACCTTC AGTATGATGA AAAATCCTTA TGCATTAGGT TTTTCCCTTG CTATTGGTTT GTATGTGGCC ACCGAAGTGG CGATTTATGT ATGGATGCCT AGCTTGCTGC AAGAGTATCA GGGGGATTAC ACAGTACTTG CGGCCTATGC CTTGACCATC TTTTTTACCC TGCGAGCGGG TGGACGGTTT TTGGGAGGGT GGATACTAAA TCACTTTTCG TGGCAACAGG TTATGTTCTG GTTTAGCTTA GCGATCAGCA TTTGCTACCT CGGCTCTATG CTCTATGGCG TTGAGGCCGC AGTTATTCTC TTGCCCCTCT CTGGGCTGTT TATGTCAATG ATGTATCCCA CTTTAAACTC CAAGGGGATC AGTTGTTTCC CCGTGGCACA GCACGGCTCT GTGGCTGGAG TTATCCTGTT TTTTACCGCG GTTTCTGCGG CGTTGGCTCC CCTGTGCATG GGGTTAGTTG GGGATATTTT CGGCCATGTG AAGTATGGCT TTTACCTCGC AACCGGGTTT GCCGTTTTGT TGTGCCTGTT AGCGGGGGTT AATCTGATTA AAGATCCTTC TCAAGCTCTG TTAAGCCGTG AAACCGCTTG A
|
Protein sequence | MVSDSNSAEN RHHTRIRVLT YLMFFMFAMT SDAVGVIIPQ LISEFGLSLS QASAFHYMPM IFIAISGLFL GFLADKIGRK LTILLGLLLF AIACFLFALG ESFYYFLLLL ALVGLAIGVF KTGALALIGD ISRSTKQHSS TMNTVEGFFG VGAMVGPAIV SYLLISGVSW KYLYFGAGVF CLLLCWLAFR ADYPQVKRSS TETINLTNTF SMMKNPYALG FSLAIGLYVA TEVAIYVWMP SLLQEYQGDY TVLAAYALTI FFTLRAGGRF LGGWILNHFS WQQVMFWFSL AISICYLGSM LYGVEAAVIL LPLSGLFMSM MYPTLNSKGI SCFPVAQHGS VAGVILFFTA VSAALAPLCM GLVGDIFGHV KYGFYLATGF AVLLCLLAGV NLIKDPSQAL LSRETA
|
| |