| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0018 |
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| Symbol | fadB |
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| ID | 4250617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 21173 |
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| End bp | 23323 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638116557 |
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| Product | multifunctional fatty acid oxidation complex subunit alpha |
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| Protein accession | YP_732157 |
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| Protein GI | 113968364 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | [TIGR02437] fatty oxidation complex, alpha subunit FadB |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0281216 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000170184 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCTACC AAAGTCCTAC AATTCAGGTT GAGTTACTCG AGGATAATAT TGCCAAGCTG
TGCTTTAACG CACCCGGTTC GGTGAACAAA TTCGACAGAG AAACACTCGC CTCACTCGAT
GCCGCATTAG ATAGCATTAA ACAACAATCA AACATTCAGG CTTTAGTGCT GACCTCAGGT
AAAGATACCT TTATCGTGGG TGCCGACATT ACTGAATTTT TAGGCTTATT CGCACAGGAT
GATGCGGTAC TGCTCTCTTG GGTTGAACAG GCCAACGCCG TATTCAACAA ACTCGAAGAT
TTACCTTTCC CAACCGCTTC AGCGATTAAA GGTTTCGCCC TAGGCGGCGG TTGTGAAGCT
ATTCTGGCAA CGGATTTCCG TATCGCCGAC ACCACAGCCA AAATCGGCCT GCCCGAAACC
AAACTGGGCA TTATCCCAGG CTTTGGTGGC ACAGTGCGTT TACCACGTGT GATAGGTGCG
GATAACGCCC TTGAGTGGAT CACCACGGGT AAAGATCAGC GTCCAGAAGA TGCCTTAAAA
GTCGGTGCGG TTGATGCAGT TGTTGCGCCA GAGGCTTTAG AAGCCGCCGC CATTCAAATG
CTAAAAGATG CAGTTGCAGA AAAGCTTGAT TGGCAAGCCC GTCGCCAACG TAAGATGTCA
CCACTGACCT TACCAAAACT CGAAGCCATG ATGTCTTTCA CTACCGCTAA AGGCATGGTG
TTTGCGGTTG CGGGTAAACA CTACCCAGCA CCTATGGCGG CAGTCAGCGT TGTTGAACAA
GCGGCGACCA AAGGCCGCAG CGACGCACTG CAAATTGAAC ATCAGGCGTT TATCAAGTTA
GCGAAAACCG ATGTAGCCAA GGCGTTGATC GGTATCTTCT TGAATGACCA ATTAGTCAAA
GGCAAAGCTA AAAAAGCGGG CAAACTCGCT AAAGATGTGA AAAGCGCCGC CGTATTAGGT
GCTGGCATCA TGGGTGGCGG TATCGCTTAC CAAAGCGCCA GTAAAGGCAC GCCAATAGTA
ATGAAGGATA TCGCTCAACC TGCATTAGAT TTAGGTTTAG GCGAAGCCGC TAAACTGTTA
TCTGCGCAAG TTGCTCGCGG CCGCTCTACC CCAGAAAAAA TGGCTAAGGT GCTGAACAAC
ATCACTCCAG CCTTAGACTA TGCTCCAGTT AAACATGCTG ACGTGGTTGT CGAAGCCGTA
GTTGAGCATC CAAAAGTGAA GGCACAAGTA CTGGCGGAAG TTGAACAATA CGTGAGTGAA
GATGCGATTA TCGCCTCTAA CACGTCAACT ATTTCAATCA ACCTGCTAGC AAAGAGCATG
AAGAAGCCTG AGCGTTTCTG CGGTATGCAC TTCTTCAACC CTGTGCACAA AATGCCATTG
GTTGAAGTTA TTCGTGGCGA GCACAGCTCA GAAGAAACCA TCGCATCTGT TGTTGCCTAC
GCCAGCAAAA TGGGTAAAAC CCCAATCGTT GTTAACGATT GCCCGGGTTT CTTCGTTAAC
CGCGTACTCT TCCCTTACTT TGCAGGCTTT AACGGCCTGC TCGCCGAAGG TGGCGACTTT
GCCGCTATCG ATAAAGTGAT GGAAAAACAA TTCGGCTGGC CAATGGGCCC TGCTTACCTG
CTAGACGTTG TCGGCCTAGA CACGGGGCAC CACGCGCAAG CGGTAATGGC CGAAGGCTTC
CCCGATCGTA TGGGCAAATC TGGCAATGAC GCGATTGACG TGATGTTCGA GAACAAACGT
CTCGGTCAGA AGAATGGTAA AGGTTTCTAC GCTTACTCTG TAGATAGCCG CGGTAAGCCA
AAGAAAGATG TCGACCCAAC CAGCTACGAG CTGCTGAAAG CCGCCTTTGG TGAGCAAAAA
GCATTCGATG CGGATGAGAT CATCGCCCGC ACTATGATCC CAATGATTAT CGAAACCGTT
CGCTGTTTAG AAGAAGGCAT TGTGGCTTCA CCTGCCGAAG CGGATATGGG CTTGGTCTAT
GGTTTAGGTT TCCCTCCATT CCGTGGTGGT GTATTCCGTT ACTTAGATAC TATGGGCGTA
GCCAACTTTG TCGCCTTAGC TGATAAATAC GCTCACTTAG GTGGTTTGTA TCAAGTCACC
GACGCCATGC GCACCCTTGC AGCCAACAAC GGTAGCTACT ACCAAGCCTA A
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| Protein sequence | MIYQSPTIQV ELLEDNIAKL CFNAPGSVNK FDRETLASLD AALDSIKQQS NIQALVLTSG
KDTFIVGADI TEFLGLFAQD DAVLLSWVEQ ANAVFNKLED LPFPTASAIK GFALGGGCEA
ILATDFRIAD TTAKIGLPET KLGIIPGFGG TVRLPRVIGA DNALEWITTG KDQRPEDALK
VGAVDAVVAP EALEAAAIQM LKDAVAEKLD WQARRQRKMS PLTLPKLEAM MSFTTAKGMV
FAVAGKHYPA PMAAVSVVEQ AATKGRSDAL QIEHQAFIKL AKTDVAKALI GIFLNDQLVK
GKAKKAGKLA KDVKSAAVLG AGIMGGGIAY QSASKGTPIV MKDIAQPALD LGLGEAAKLL
SAQVARGRST PEKMAKVLNN ITPALDYAPV KHADVVVEAV VEHPKVKAQV LAEVEQYVSE
DAIIASNTST ISINLLAKSM KKPERFCGMH FFNPVHKMPL VEVIRGEHSS EETIASVVAY
ASKMGKTPIV VNDCPGFFVN RVLFPYFAGF NGLLAEGGDF AAIDKVMEKQ FGWPMGPAYL
LDVVGLDTGH HAQAVMAEGF PDRMGKSGND AIDVMFENKR LGQKNGKGFY AYSVDSRGKP
KKDVDPTSYE LLKAAFGEQK AFDADEIIAR TMIPMIIETV RCLEEGIVAS PAEADMGLVY
GLGFPPFRGG VFRYLDTMGV ANFVALADKY AHLGGLYQVT DAMRTLAANN GSYYQA
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