Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0004 |
Symbol | |
ID | 4250603 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3843 |
End bp | 6260 |
Gene Length | 2418 bp |
Protein Length | 805 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638116543 |
Product | DNA gyrase subunit B |
Protein accession | YP_732143 |
Protein GI | 113968350 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.850847 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000498396 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
| |
Sequence |
Gene sequence | ATGTCAGAGA ATAGTTACGA TTCTTCGAGT ATTAAGGTCC TAAAGGGCCT TGATGCAGTA CGTAAGAGAC CTGGGATGTA TATTGGTGAC ACCGACGACG GTACGGGTCT ACATCATATG GTGTTCGAAG TAGTCGATAA CTCTATCGAT GAAGCCTTAG CCGGCCATTG TACTGATATC ACTATTACTA TCCATGTGGA TGGTTCGGTC TCCGTTCGCG ACGACGGCCG TGGTATTCCT GTGGCGATTC ACCCGGAAGA AGGCGTGTCT GCCGCCGAGG TGATCATGAC GGTACTGCAC GCGGGCGGTA AGTTCGACGA TAACTCTTAT AAAGTGTCAG GTGGTCTGCA CGGCGTGGGT GTATCGGTAG TTAACGCGCT GTCTAAAAAG CTGCAGTTAA CCATTCGCCG CGAAGGAAAA GTCCACGAGC AGTTTTATAC CCACGGTGTA CCTGACGAGC CAATCAAAGT GATCGGCGAT GCGACTAAAA CCGGTACCGA AATCCGTTTC TGGCCAAGTG AAGAAACCTT CAGCGATGTT GAGTTCCACT TCGAGATTCT GGCAAAGCGC GTGCGCGAAC TGTCATTCCT CAACTCAGGC GTGGGTATCC GCTTAGTCGA CGAGCGTGAC AATAAGAATG AATTCTTTAA ATACGAAGGC GGTATCAGCG CATTCGTTGA TTACCTAAAC CGTAATAAAA CGCCAGTAAA CAAAGACGTA TTCCACTTTA TGCAAGAGCG TGAAGATGGC ATTACCGTTG AAGTGGCGAT GCAGTGGAAC GATGGTTACC AAGAAAGCAT TTTCTGTTTT ACCAACAACA TTCCACAGCG TGATGGTGGT ACTCACCTAG CGGGTTTCCG TAGTGCGTTG ACACGTAACC TCAACAACTA CATGGAAAAC GAAGGTTATA ACAAGAAAGG CAAAACTAAC GCGACAGGCG ATGACGCCCG CGAAGGTTTA ACGGCCGTGA TTTCAGTTAA AGTGCCTGAT CCTAAGTTCA GCTCGCAAAC TAAAGACAAG TTAGTCTCTA GCGAAGTGAA AGCCGCGGTT GAACAAACCA TGGGTGAAAA GCTAAACGAC TATCTGCTGG AAAACCCTGC CGATGCTAAG TTAATCGTCG GTAAGATTGT CGATGCGGCC CGTGCCCGTG AAGCGGCGCG TAAAGCCCGT GAAATGACCC GTCGTAAAGG CGCACTCGAT TTAGGTGGTT TGCCAGGTAA GCTGGCGGAT TGCCAAGAGA AAGACCCTGG TCTTTCAGAA ATCTACATAG TGGAAGGGGA CTCTGCTGGC GGTAGCGCTA AGCAGGGACG TAACCGTAAG AACCAAGCGA TTCTGCCACT GAAAGGTAAA ATCTTAAACG TTGAGAAAGC GCGTTTCGAT AAAATGCTTT CTTCTCAAGA GGTTGCAACG CTAATTACCG CACTTGGCTG TGGTATTGGT CGCGACGAAT ACAACCCGGA TAAGACGCGT TACCACAACA TCATCATCAT GACGGATGCC GACGTCGACG GCTCGCACAT TCGTACCTTG CTGTTGACCT TCTTCTTCCG CCAAATGCCT GAACTGATTG AACGTGGTTA TGTGTATATT GCTCAGCCGC CTTTATTCAA AGTGAAGAAA GGTAAGCAAG AACAATATCT CAAAGACGAA GCAGCACTGA CTCAGTATCT GACCACTCAA GCGTTAGATG GTACTAGCAT TTACCCATCT CAAGGTGCGC CAGGTATGTC GGGTGAACCA TTAGAGCGTT TAGTGACTCA GTATCGTGAA GTGGAAGCGA TTGTTGCTCG TTTAGAGCAA CGTTACCCAA CGCAGATCAC CAACCGCATG CTTTATCATC CAATGATCAA CAACGAGATG TTGGCGGATG AAGGCAAGAT GAAGGAATGG ATCGACGCCT TTATCCATGA GCTGGTGGAA TTAGAAAACA GCGGTGTGTT GTATTCTGGT GAGCCTGTAC TCGATCCTGA GCGTAAAGTG TATCTGCCGA AGATCACTAT CCGTAAACAC GGTATCGATA CACACTACCT GTTCAGCTAC GATTTCTTCC AATCAACTGA TTACCAACGC ATTGGTAAGT TAGGTGCGGC GCTCGAAGGC CTGATTGAAG TCGGTGGTTA TGTACAGCGT GGCGACCGTG TGAAGGAAGT GGGTAGCTTC ATTGAAGCGT TAGATTGGAC CATCGGCGAA GCCAAACGTG GCCTCTATAT CCAACGCTAT AAAGGATTGG GTGAGATGAA CCCTGAGCAA TTGTGGGAAA CCACGATGGA TCCTGAATCT CGCCGCATGC TGCAAGTGAC GATTGATGAT GCCGTTGGTG CGGATCAGCT GTTTACTTGT TTGATGGGCG ACCAAGTGGA ACCACGCCGT GACTTTATCG AAGCCAACGC GCTGAACGTG GCTAACTTAG ACGTTTAA
|
Protein sequence | MSENSYDSSS IKVLKGLDAV RKRPGMYIGD TDDGTGLHHM VFEVVDNSID EALAGHCTDI TITIHVDGSV SVRDDGRGIP VAIHPEEGVS AAEVIMTVLH AGGKFDDNSY KVSGGLHGVG VSVVNALSKK LQLTIRREGK VHEQFYTHGV PDEPIKVIGD ATKTGTEIRF WPSEETFSDV EFHFEILAKR VRELSFLNSG VGIRLVDERD NKNEFFKYEG GISAFVDYLN RNKTPVNKDV FHFMQEREDG ITVEVAMQWN DGYQESIFCF TNNIPQRDGG THLAGFRSAL TRNLNNYMEN EGYNKKGKTN ATGDDAREGL TAVISVKVPD PKFSSQTKDK LVSSEVKAAV EQTMGEKLND YLLENPADAK LIVGKIVDAA RAREAARKAR EMTRRKGALD LGGLPGKLAD CQEKDPGLSE IYIVEGDSAG GSAKQGRNRK NQAILPLKGK ILNVEKARFD KMLSSQEVAT LITALGCGIG RDEYNPDKTR YHNIIIMTDA DVDGSHIRTL LLTFFFRQMP ELIERGYVYI AQPPLFKVKK GKQEQYLKDE AALTQYLTTQ ALDGTSIYPS QGAPGMSGEP LERLVTQYRE VEAIVARLEQ RYPTQITNRM LYHPMINNEM LADEGKMKEW IDAFIHELVE LENSGVLYSG EPVLDPERKV YLPKITIRKH GIDTHYLFSY DFFQSTDYQR IGKLGAALEG LIEVGGYVQR GDRVKEVGSF IEALDWTIGE AKRGLYIQRY KGLGEMNPEQ LWETTMDPES RRMLQVTIDD AVGADQLFTC LMGDQVEPRR DFIEANALNV ANLDV
|
| |