Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_4127 |
Symbol | |
ID | 4480344 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 4959434 |
End bp | 4961542 |
Gene Length | 2109 bp |
Protein Length | 702 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 639728745 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_871750 |
Protein GI | 117922558 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00050238 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.542591 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTATTTA AATATTCAGT GGTTGGTTTG GCCGTAGGGT CTGCATTAAT GGCGATGCCT GTTATGGCCG AAGCGCCAAA TGATGAAAAT ATTGAGCGCA TTAATGTGAC TGGCCGTACG TTTAACGACT ATAAAGTCGG CAGTGCATCA GGTGCTATGC GTGGTGATAT CGATTTAATG GATACACCAC AATCTGTGAA TGTCATCCCC GACTTTGTTA CCGATGAGCA ATTAGCGACT AACCTTGCGG AAGTCTTAGT AAACGATTCA AGTGTGACAG CGGGAACTAC CCGTTGGAAC CGCCAAGTCT TCAGTATTCG TGGTTTTGAA TTAGATTCGG GCAACGGTTA TCTGATCAAC GGCCATCAGC AATGGTCCCA CTATGTTCAA CCTATCGAAA CCCTGCAACA AGTCGAAGTG CTGAAAGGCC CTTCGAGCAT GTTGTATGGC CAATCTGGAC CTGGCGGTTT GGTGAATATG GTCACCAAGA AGCCCACCTA TGATTCTATG CTCAACTTAG GGTTTGATAC TGACGGTTAC GGCTCTACCC GTGCGCAGTT AGATGCGGGT GGCAGTTTAA ATGAGGCTCA AAGCGTTCGT TACCGTGGTG TGTTAGTCAA ACAAGACACT AAATACTGGC GTGAATATTC AACGACCGAT GAAAACCAAG AGCGTGATCG TTGGTTAGGT TATTTGAACC TAGAATTCGA TATCAGTGAT GATCTGTTAT TGTCGCTGAA ATACGACCAT ACCCAAGATA AAACCGGAAT TGATGCCGGC GGTTGGTTAG ATAAGCAAGG CAATGTTGTT GGTCAACGTA AAACCATCTG GGATGCGCCC TGGGCCTTTA CCGATAACAC GGTTTCTAAC TTAGGTGCCG ATTTAACTTG GCATATGAAT GACGATTGGA AAGTTAAACT GGGTTATAAC GATCAACAGT TTAACCGCCA GCGTTTCGAT TCTGCGCCGC AATATAATGA AGACCCATTC ACCTCGGGAT ACAGCATTAG ACCATTCGAT CGTTACGATG ATTGGCAGCA TAAAACCGCC TATGTCGATT TTACAGGCGA GTTTGCATTA GCGGGTATGG AGCATCAGTT GCTGATTGGC GCTAACTATC TCGATTACTT CTACCAGCAA CAAATCGCCC GTGGCGCAGC GCAAACCGTT ATTCCTGGTC AGCCAGTGAT TCAACCGGAT CTTGATTACC ATACAGGTAA GAAAGGCACT CCAAATGAAT ATAAATACTA CGGTTTCTAT CTGCAAGATT TAATGACCAT CAACGAACAA TGGAAATTGC TCGCTGGGGT ACGTTATGAC GAGCAGAAAA AAGATGGATT TGGTGAAAAT AGCTATGCCG TATCACCTAA ATTTGGGGTG ATCTATTCAC CAATGACCAA TGGCAGCATA TACGTTAACT ACTCTAAGAG CTTTACACCG CAAGGTGGTA TTACCGACCC TCTAAATGTT AATCATGACA CTAACCTCAA ACCTGAATAT GGCATTCAAT ATGAAGTGGG GACTAAGTGG GAACTGTTTG ACGATAGCTT GTTATTAACG GCTGCGGTAT TTGATGTCAC GCTTGAGAAT ATCTCTATCA ATGAGGTGCT GACAGCAAGT GACCCACGAA GTGAAGATGG AAAATACACT TCAATCACCA CCCAAGGCGG TGAGCAAAAA CATCGCGGCT TTGAAGTCGG TGCCCAAGGT AAGCTAGGCG ATAGCTGGTT TGTGACTTCA TCTATGATGT ACCTCGATGC TGAGTATCAA ACGGGTGATG AGCGCGAAGG TAAAACGCCT ATCGATGCCC CTGAATGGTC GGCCAATATC TGGACTCGTT ATGAAGTAAC CGATAACTTT GCAATGAACT TCGGTGCTAT CTACGTCGGA GAGCGTTTTG CCGATGTGAA TAACACTATC AGTAAAGACG GTTATGTTCG CTTCGATATC GGTGCTGCCT ACACTATGGA TATTATGGGT AAAGATGTAA GCATCCGCGC GAACGTGAGA AACCTGTTTG ATACCGATTA TATCGATGGC GGCCAATACA ATATGGTGAC CCTAGGCCAA GATCGTAACT TCAGTGTGGC ACTTGAAGCT AAGTTCTAA
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Protein sequence | MVFKYSVVGL AVGSALMAMP VMAEAPNDEN IERINVTGRT FNDYKVGSAS GAMRGDIDLM DTPQSVNVIP DFVTDEQLAT NLAEVLVNDS SVTAGTTRWN RQVFSIRGFE LDSGNGYLIN GHQQWSHYVQ PIETLQQVEV LKGPSSMLYG QSGPGGLVNM VTKKPTYDSM LNLGFDTDGY GSTRAQLDAG GSLNEAQSVR YRGVLVKQDT KYWREYSTTD ENQERDRWLG YLNLEFDISD DLLLSLKYDH TQDKTGIDAG GWLDKQGNVV GQRKTIWDAP WAFTDNTVSN LGADLTWHMN DDWKVKLGYN DQQFNRQRFD SAPQYNEDPF TSGYSIRPFD RYDDWQHKTA YVDFTGEFAL AGMEHQLLIG ANYLDYFYQQ QIARGAAQTV IPGQPVIQPD LDYHTGKKGT PNEYKYYGFY LQDLMTINEQ WKLLAGVRYD EQKKDGFGEN SYAVSPKFGV IYSPMTNGSI YVNYSKSFTP QGGITDPLNV NHDTNLKPEY GIQYEVGTKW ELFDDSLLLT AAVFDVTLEN ISINEVLTAS DPRSEDGKYT SITTQGGEQK HRGFEVGAQG KLGDSWFVTS SMMYLDAEYQ TGDEREGKTP IDAPEWSANI WTRYEVTDNF AMNFGAIYVG ERFADVNNTI SKDGYVRFDI GAAYTMDIMG KDVSIRANVR NLFDTDYIDG GQYNMVTLGQ DRNFSVALEA KF
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