Gene Shewana3_4076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_4076 
Symbol 
ID4480290 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp4898745 
End bp4900127 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content52% 
IMG OID639728691 
Producttwo component, sigma54 specific, Fis family transcriptional regulator 
Protein accessionYP_871699 
Protein GI117922507 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.311151 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAGA TAGATAATAA CCTCAAGCCC CTTCCTTCCG CTGTGTCTGT CCTGATCGTC 
GATGACGAGC CCGGGATGCG TAGCTTTTTG AATAAGGCGC TCTCGAAAAA ATTCGCCTTA
GTCGAAACGG CGGGCAGTAT TGAAGATGCT GAGCAGTTAC GTAGTCGCTG CCACTTCGAC
CTATTGATTG TCGATATCCG TTTACCGGGT CGCTCGGGCA TCGAGTGGCA CGAAGCCTTA
GATGAACAAG GCCGCCGATC TGATGTGATT TTTATGACTG GCTATGCGGA TTTAGAAGTC
GCGATTAAGG CGCTGCGGGC TGGTGCCTCA GACTTTATTA TGAAGCCCTT CCACCTCGAG
CAGATGATGT CGGCGGTTGA CCGTTGTATT GAACGCCGTT TGCTGCGCCG CGAAAACTTA
ATGCTGCGCC GTGAAGTCTC CATTGGCTAT TCCTCCACCA TTATAGGTAG CAGCGAGGCC
ATGAAGTCGG TCAAGCAAGT GATTGAGCGC GTGGCACCAA CCAATGCCGT GGTGTTAATT
CAAGGCGAAT CGGGCACGGG TAAAGAGCTG GTCGCGCGCC AATTACACTT ACTCAGCGGC
CGCCAAGGGC CATTTGTACC CGTTAACTGC GGCTCTATCG CCCCCGAACT ACTGGAGAGT
GAACTCTTTG GCCATACGGC AGGGGCATTT ACTGGCGCTA AGGGAAATCG CGAAGGCTTA
TTCAGTTTTG CCTCCGGCGG CACTATTTTC CTCGATGAAA TTGGTGAGAT GCCCCTCAAG
ATGCAGACGG CATTGCTCAG GGTATTAGAG CAAAAGGCGA TTCGCCCCGT CGGCAGTGAG
AAGGAAGTCA ATATCGATGT CCGGGTGATT GCGGCCACTA ACCGTACGCT GGTGGATGAA
GTCGAGGCGG GTAACTTCCG TCGTGATCTT TATTATCGCT TGAATGTGCT GGATATTTTA
ATTCCTCCCC TGCGTGAGCG TCCGGAAGAT GTGGTCGAAT TGACCCATCA CTTTACTCGC
CAATTGGCAG CCGAATTGGG TGTGCGCGAA GTCGTGTGGA GCCATGAGGA TATGGTGAAG
CTGCAACAGC ACGAGTGGCC AGGCAATATC CGTGAACTGC GCAATATGAT TGAACGCTGC
ATTCTGCTTG GCAAGCCGCC AGCGGAATAC TGGAAGCAGC AGGTCAAGAC AGAGTCTTCG
GCCTCCCAAG GTTATCCCTT AGATTGGCCG TTGAAAGAAG TGGAAAAACA CCATGTGACC
AGCGTGGTGG ATCTGCACTC TGGCAATAAA TCAGCAGCGG CGAGGGACTT AGGCGTTTCC
CGTAAGACCT TAGATCGCAA GTATAAAGAG TGGTTTGACG TTAGCGACGA GCAGGAGTTC
TAA
 
Protein sequence
MSQIDNNLKP LPSAVSVLIV DDEPGMRSFL NKALSKKFAL VETAGSIEDA EQLRSRCHFD 
LLIVDIRLPG RSGIEWHEAL DEQGRRSDVI FMTGYADLEV AIKALRAGAS DFIMKPFHLE
QMMSAVDRCI ERRLLRRENL MLRREVSIGY SSTIIGSSEA MKSVKQVIER VAPTNAVVLI
QGESGTGKEL VARQLHLLSG RQGPFVPVNC GSIAPELLES ELFGHTAGAF TGAKGNREGL
FSFASGGTIF LDEIGEMPLK MQTALLRVLE QKAIRPVGSE KEVNIDVRVI AATNRTLVDE
VEAGNFRRDL YYRLNVLDIL IPPLRERPED VVELTHHFTR QLAAELGVRE VVWSHEDMVK
LQQHEWPGNI RELRNMIERC ILLGKPPAEY WKQQVKTESS ASQGYPLDWP LKEVEKHHVT
SVVDLHSGNK SAAARDLGVS RKTLDRKYKE WFDVSDEQEF