| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4066 |
|---|
| Symbol | |
|---|
| ID | 4480280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4885090 |
|---|
| End bp | 4888143 |
|---|
| Gene Length | 3054 bp |
|---|
| Protein Length | 1017 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639728681 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_871689 |
|---|
| Protein GI | 117922497 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCACCT CTGTGATCCG TTTTTCGCTC ACTCAGCGAC TGTTTGTGCT GATAGTAGCG
CTGATCCTCA TGTTGGCTGG TGCACGGGCT TGGTTTGCCA TTCCCTTGGA TGCCTTTCCG
GATATTTCCC CAACCCAAGT GAAGATTATC CTCAAGGCTC CGGGCATGAC GCCGGAGGAA
ATCGAAGCCC AGATTACTGT CCCGATTGAA ACCGAGCTTT TAGGTATTCC GCGGCAATCG
ATTCTGCGCT CGACCACTAA GTACGCCATT AGCGATATCA CCCTCGATTT TGAAGAAGGC
ACGGATATCT ATTGGGCGCG CCAACAGGTG AGCGAGCGCC TCTCAGCGGT CTGGGACAGT
TTTCCCGAAG GCGTAAGTGG CGGTGTGGCG CCCATGAGCA CGCCGCTCAG TGAAATCTTT
ATGTTTTCAC TCGAAAACCC CAATCTTTCC CTGCTGGAGC GACGTCAATT ACTCGAGTGG
GAAATTCGGC CGCTGCTGCG CACAGTGCCC GGTGTTGCCG ATGTGAATAT CCTCGGCGGT
TATGCCAAGA GTTTTAGTAT CAGCCCCAAT CCTGCGGCAA TGTCGGCTGC GGGCGTGAGC
TTTGCCACGC TGCAACAGGC GATTGTGGAG AATAATCACA ACGAAGGTGC AGGTAAGCTC
ACCATAGGTA CAGACACCAT CATAGTGCGC TCCGAGGGAC GCATCGATGA TATCGACGAG
CTTAAACAGC TAGTGATCAA AGCCGATAAT GCCAAGGTCT ACCGCTTGCA GGATCTTGCC
GATGTCCAGA TAGGCCACCT TGCGCGCTAC GGCGCCGTCA CTAAGGATGG CAACGAAACC
GCCGAAGCCT TAATCATCGC CCTCAAGGAC GCCAATACGG CACAAGTGGT TAACAACATT
AAGGAAAAGC TGGCGCAAAT CAGCCTAACT CTCCCCGAAG GCAGCCAGAT AAATACCTTT
TACGACCGCG CCAACCTGAT CAACACCGCT ATCGAGACCA TTTCCAATGC GCTATTCGAG
GCCGTTGTGT TGGTCATCGT ATTGCTGGCG CTGTTTTTAG GAAATGTGCG CGCCGCGCTA
GTGGTCTCAC TATCGCTGCC GCTGGCCGCA CTGTTCACCT TTTTGATGAT GGATCACTTC
AATCTCTCCG CTAACTTGAT GAGCCTCGGT GGCCTCGTTA TCGCCATCGG CATGTTGGTG
GACTCCTCCG TGGTCGTGGT TGAAAACATG GTGAATTTAA TCGCCACTAA ACAGCGTTTG
CCGCGTTTGC ACTTGATCTT TCGCGCCACC AAAGACGTCG CCATTCCTGT GGTCTCGGGC
ACGGTTATCG TGATCATAGT GTTCTCACCA CTGCTTACCC TCAGTGGTTT AGAGGGCAAA
CTCTTTACCC CAGTCGCCAT CACCATAGTG TTTGCCATGT TGTCGGCGCT GGTGCTATCG
CTGACAGTGA TCCCCGTGAT TGCCTCGTAC CTAGTCAATG AGAAGGCCGC GAAAGAACCT
AAGGCCGTCG AAAAGCTCAA GCATCTTTAT CTTGGCAGCC TAAAGGCCTG CTTTGGTTGG
CAAAAACCTT TTATGCTCAT CGCCTTTAGC TTGCTGATCA TCAGTCTCGG CCTGTTTAGT
CTGGTGGGGA AAACCTTTAT GCCGACCTTA GATGAGGGCG ACATCATTCT CCAGTTAGAG
AAATCCCCTT CGATTTCCCT CGATGCCTCC ATCGCTATCG ATAAACAGAT CCAACAAACC
CTGCTAATCC AAATCCCCGA AATCAAGCAG ATGGTGGCGC GCACCGGCGC CGATGAGATA
GGTTTAGATC CCATGGGACT GAACGAAACC GATGTGTTTT TAGAGCTGGC GCCCCGCAGC
GAATGGCGTT TTGCAACCAA AGAGCAGCTT ATCGATGCCA TCCGCACTGT GCTGCTTAAA
TATCCCGGCG TGAACTTTAA CTTTACGCAA CCGATACAGA TGCGCGTCTC CGAAATGCTC
ACCGGCAGTA TTGGCGATGT CGCGATTAAA GTATTCGGTA ATGATATCGA GACCTTAGGC
AAGCTCACCG GAGAGATAGA ACAACTGGTC ACCGCCACTC AGGGCAGCGT CGACGTTAAG
ATGGCGATGA TTGAAGGCAG CCCCTTTATT AATCTCACCT TAGATAATGA GCTGGCCCGA
GGGTTTGGGA TGAGCACTAT GGAGTTTGCC CGCTACCTCA AGAGCCAACT CGAAGGCGTG
GTTGTTACCG AAGTGCTGCA AGGGAAGAAA CGCACGCCCG TGCTTATCGC CAATAATCAG
GCGCAGATCA GCAATATCAA CGAACTGCAA AATCAGCTAT TGGTGATGCC GGATCATTCC
CTAAAACGCC TAAGTGACGT GGCGGTATTG AGCTATAAAC AGGGCCCAAT CCTGATCGAG
CGGGAACAGG GAAATCGCTT TTCGGTGATC ACTACCAACG TGCAAGGGCG GGATATTGTG
GGCTTTGTGG AGGAGCTTAA TAGCAAAATC GCCAATGAAA TCAAACTGCC CAGCGGCTAT
AGCGTCAGCT TCGGTGGCGA GTTTGAAAAC CAGCAACGCG CCACCAGCAA TTTGTTACTG
GTGATCCCCA TAGCTATCGC ACTGATCACT TTGATTTTAT TCACCACCTT CGGCTCTCTA
GCAAAATCGG GATTAATCCT CGCTAACGTC CCGTTTGCCA TGATGGGCGG TATCGTCAGC
TTGTATCTCT CGGGGGAATA CCTCTCGGTG CCCGCCTCGG TAGGTTTTAT CGCCCTGCTA
GGTGTCGCCG TGCTTAACGG CGTAGTGATG GTCAGTTATT ACGAACAAAC CAAATACTTA
TTCGGTAGCC TTAGGGAACG GGTCGAACAG GGTGCCGCCC GGCGACTCAG ACCCATTCTG
ATGACAGCCA CCACCGCCAT GTTTGGTTTG ATCCCCTTAG TGTTCGCCTC GGGCCCCGGT
GCTGAAATCC AAAAACCCTT GGCCATTGTG GTGATCGGCG GATTGCTCAC ATCGACCATT
ACGACCCTGT ATTTACTGCC CATGTTGTAT TTTTGGCTGG AGAAACGCCG ATGA
|
|---|
| Protein sequence | MLTSVIRFSL TQRLFVLIVA LILMLAGARA WFAIPLDAFP DISPTQVKII LKAPGMTPEE
IEAQITVPIE TELLGIPRQS ILRSTTKYAI SDITLDFEEG TDIYWARQQV SERLSAVWDS
FPEGVSGGVA PMSTPLSEIF MFSLENPNLS LLERRQLLEW EIRPLLRTVP GVADVNILGG
YAKSFSISPN PAAMSAAGVS FATLQQAIVE NNHNEGAGKL TIGTDTIIVR SEGRIDDIDE
LKQLVIKADN AKVYRLQDLA DVQIGHLARY GAVTKDGNET AEALIIALKD ANTAQVVNNI
KEKLAQISLT LPEGSQINTF YDRANLINTA IETISNALFE AVVLVIVLLA LFLGNVRAAL
VVSLSLPLAA LFTFLMMDHF NLSANLMSLG GLVIAIGMLV DSSVVVVENM VNLIATKQRL
PRLHLIFRAT KDVAIPVVSG TVIVIIVFSP LLTLSGLEGK LFTPVAITIV FAMLSALVLS
LTVIPVIASY LVNEKAAKEP KAVEKLKHLY LGSLKACFGW QKPFMLIAFS LLIISLGLFS
LVGKTFMPTL DEGDIILQLE KSPSISLDAS IAIDKQIQQT LLIQIPEIKQ MVARTGADEI
GLDPMGLNET DVFLELAPRS EWRFATKEQL IDAIRTVLLK YPGVNFNFTQ PIQMRVSEML
TGSIGDVAIK VFGNDIETLG KLTGEIEQLV TATQGSVDVK MAMIEGSPFI NLTLDNELAR
GFGMSTMEFA RYLKSQLEGV VVTEVLQGKK RTPVLIANNQ AQISNINELQ NQLLVMPDHS
LKRLSDVAVL SYKQGPILIE REQGNRFSVI TTNVQGRDIV GFVEELNSKI ANEIKLPSGY
SVSFGGEFEN QQRATSNLLL VIPIAIALIT LILFTTFGSL AKSGLILANV PFAMMGGIVS
LYLSGEYLSV PASVGFIALL GVAVLNGVVM VSYYEQTKYL FGSLRERVEQ GAARRLRPIL
MTATTAMFGL IPLVFASGPG AEIQKPLAIV VIGGLLTSTI TTLYLLPMLY FWLEKRR
|
|---|
| |