| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4016 |
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| Symbol | |
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| ID | 4480230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 4821438 |
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| End bp | 4826318 |
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| Gene Length | 4881 bp |
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| Protein Length | 1626 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639728631 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_871639 |
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| Protein GI | 117922447 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTGT CGATGAGTTA CAAGCAAGCC TCCAAGTGGG GGTTATTCGT CTTGCTCGTG
GGACTGTTTT TCAGTGCCGT GCTCGCTTGG CAGGTGAGTC GTATCAATGC ACAAACCATT
TCGCAGGCGC TAGAAGAGCG CGCGCAGCAG ATCAGTGAAA ATGTGACAAA CCGGATTACC
CTGTACCAAT ATGGCCTACG GGGCGCCCGA GGCATGATAT TGACGGCGGG CGAAGACCAT
ATTAGTCGTT CCATGTTTCA AAACTACAGC CTGACGCGGG ATGTGGATGA GGAGTTCCCT
GGTGCTCGGG GTTTTGGTTT TATCAGGCGT GTCCCTAAAG AGAACGAAGC GCAGTTTTTA
GCGCGGGTTA AATCGATGGA TTGGCCTGAC TTTCATATTC GTCAGCTCAA TCCAAACGAG
GGCGAAAAAT ATCTTATTGA ATATATTGAG CCGCTCGACC GCAATAAGGC GGCAGTCGGC
TTAGACATCG CCTCCGAAAG CCATCGAAAA GAAGCTGCAG ACCGTGCCTT GTTGTCGGGG
GCGGTGCAAA TCTCTGCACC TATTACCTTA GTGCAAGCCA CGGGTAAACC GCTGCAATCG
TTCCTTATTT TATTACCCGT TTATCGTAGC GGTACCGTCC CTAAAACACC GGAAGAACGT
CTGGCTCAGG GCTTTGGCTG GAGTTACGCG CCGTTGGTCA CGACCGAAAT CTTAACGGGC
TTATCCCTTC ATCAGAAAAT GACCAAACTG ATGCTGAGCG ATGTGACGGA TGAGCAGCAG
CCGATCAATT TCTTCGAAAC CCACGCCAAT GACTTAAGCG AGTTATCGGA TTACAGCTAC
AAGTCTACTA AGACGATTTT TGGGCGGCAT TGGCAGTTTG AAGTGATTGC TTATCCGGCA
TTTATCAAAT CATTACATTT AAATAAGCCG AGTCTAGTGT TGTTCAGTGG CTGCCTGTTT
AGCCTGCTGC TGGCGGCCTT GATTGCTATG TGGTCTTTGA GCTTACAGCG TAAACAGCAA
GTGTTAGCCG AGCAGGCACG GCGCGCCAGC ATGTTGGAAC ACTCCCTCGA TGGCATTATT
AGCTATGACC TCGCCGGCAA TATCACCAGT TGGAACCAAG GCGCAGAGCG ACTCTTTGGC
TTTACGGAGC CAGAAACTCT GGGATTGCCG AGCAGTGAGT TGATTGTGCC CCCCAGCATA
GTGCTGGAGG AGCAGGCGCT ATTTGCCGAA GTGTTAGCCG GAAAAACTGT GCTTAACCGA
GTATCGCGCC ATCAACGCGC CGATGGCAGT AACCTGTCGA CCTCGACCAC GGCGTTGCCC
ATTTACGATG AACACGGTGA CATTGTTGGC TTGAGCCAAA CCATACGGGA TATCACGGCG
CAGCAGGATG CCGAGCGGCA TATTCTTAAC CTCAACGCCA GTCTTGAGCG CCAAGTCGCG
AAGCGCACCC ATGCGTTGCA GCAGGCTCTA CTCGAGAATC AGGCGTTGCT CGATACCATC
AACCAACAGT TGCATTACTC AGTCACCGAT TTAGACGGGG TGATCTTAGA TGTGAATGAA
CACTTCTGTT TGATCAGTGG CTATGCGCGG GAAGAATTAG TCGGTAAGAC CCACGCGGTG
CTTAAGTCGG GTGAGCACGA TGCTGCGTTT TGGAAGGCAA TGTGGGAACA AATTAAGGCG
GGTAAATCCT GGCATGGAGA AATCTGTAAC CGAGGGAAAG ATCAACAGCT GAAGTGGTTC
GATACTGTGA TTGGTTCAGT ATTCGATGAG CATGGTCAAG TCGAGCGATT CGTGGCGCTG
CAAACCGATA TTACCGAACG TAAATTGGCA CAGATTGAAA AAAATCGGAT TGCGACACTC
CTGACCAATG TGCTGGATGC CGCCTCCGAA ATGACCATAA TTGCCGCCGA TCCACAGGGC
ATTATCACTA TCTTCAACCG CGGTGCCGAG CGCATGTTGT GGTATTCCGC CGAAGAGATC
ATAGGCAAAA CCACCCCTGC ACCTTTCCAT ATTGCCGATG AAATTGCCGC TCGCGCCGCC
GAGCTTTCTG TTGAATACGG TCAAAAAATT CAAGGTTTTG ACACGTTTGT CCACAAGGCG
CGGGAAGAGG GCTCCGAGAC TCGTACTTGG ACCTATGTGC GTAAGGATGG TAGCCAGTTA
CCAATCTCAC TGTCAGTAAC CGCGATGCGT GGTAATGACG GTGAAATCCT AGGTTACCTT
GGGATTGGCG TGGATATTTC GCAAATTGTC GCCCAGCAAG AGGCCTTACT CACGGCGAGT
AATCACCTCA GTAAGGCGGC GGAAGTGGCT AAACTGGGGA TTTGGACCTG GAACCTGCTC
GATAATTCAT TGCAGTGGAA CGATCGCATG TTTGCGATGT ATGACCAGCC AGAAAGCCTA
AAGCAGCAAG GGCTTAGCTA TGAACATTGG CGGATGCGAG TGCACCCTGA TGATGTAATC
GAGGCCGAAG AAACGCTTAA ACGCGCGGTC GAGCATGATG AACCCTATGA GCCGATTTTT
AGGATCCTCA CAACGGACGG CGAGGTTAGA TATGTGCAGG CCGCCGCTAA AATCGAACGG
GATAGGCAGG GCCATGTGAT TCGGGTCATC GGCATCAATA TCGACATCAC CGCCCAGCGG
CAGTTAGAAA AAACACTCAG AAATGCCAAG CAGGAGGCGG ATACCGCCAA TGCCGCTAAG
TCGGCGTTCC TTGCCAATAT GAGCCATGAA ATCCGCACCC CCATGAATGC CGTGTTGGGG
ATGTTGCAGC TAATGCAATA TACCGCCCTT TCGGTGCAGC AGCAGGGCTA TGTGACTAAG
GCGCAAACGG CCGCTAAGTC ATTGCTTGGG CTGTTAAATG ATATTTTAGA CTTCTCAAAA
ATTGATGCGG GTAAGTTGAA GCTCGATCTT CATCCTTGCT CGATTGAATT GCTGATGCGG
GATCTCGCCG TGGTACTGTC GGCCAATCAT GGCAATAGCG ATGTCGAAGT GATGTTTGAT
CTCGATTCGG CGCTGCCCGC GTGGCTGCTC GCCGATCAGT TAAGGTTGCA GCAGATTTTG
ATCAACCTTG CTGGTAATGC CCTCAAATTT ACCCCACACG GACAAGTGAT CGTCGGGCTG
GAATGTCTAC GCCACGAGGC GGAGAGCGTT ACTGTACAGT TTTCGATTGT CGACAGCGGT
ATTGGCATCA GCGAGGAGCA AATCGAGCGG ATTTTCACTG GCTTTGAGCA GGCTGAGTCT
TCCACTTCTC GTCGTTTCGG CGGTACTGGG CTTGGGCTTG CGATTAGTAA ACGTCTCGTC
GAATTGATGG GTGGCCAACT GCAAGTGACC AGTAAGGTCG GTGTGGGCAG CCGCTTCTGG
TTTGATTTAA CCTTCCCCGT GATGGAAGTG GAGGCTAACC CACGCGCCGA TTTGAGCGGC
TATCGCATTT TGGTTGTCGA TGACAATCAG ATCACGACTG AGATCCTATC GAAAATCCTC
AGCGATTACG GCTGTGTGGT TGAAACCGCC TCGGGTGGTT ATCAAGCCAT TGAAAAAGTG
AAACAAGCCA CTGCCAATGC TCAGCAATTT GATGTGGTAT TGATGGATTG GCGCATGCCG
GATATCGATG GTTTACAAAC CGCCGAGATG CTGAAAAATG CTGGAACCGG CAGTTATACC
CCGCTGGTGG TGATGTTAAC GGCATACGGC CATGAAGTGA TAGCCGAGAG TCAGCATATC
AACAACGTGC CTTTTGTGAA CTTTTTAACT AAACCTGTGA CTTCACAAAT TCTGGCCGAA
GCCGTGCTTA ATGCCATCGA AGGCAAGACC ATGGACGCCA ATCCTAAACC GCGCTCACAG
CGACTCTTGG CGGGGCTCAC GCTGTTAGTG GTTGAGGATA ATCAATTAAA CCGCGAGGTG
ATTGACGAGC TGCTCACCTA CGAGGGCGCA ACCGTTGTGC TGGCCGAAGG CGGCATTGAA
GGGGTTACCC AAGTATTAGA CAGCGGCGAC ATGTTTGATG CCGTGATTAT GGATATGCAA
ATGCCTGATA TTGATGGCCT AGAAGCCACG CGGCGGATCC GCGCCGATGG CCGCTTTGAC
CAGTTGCCTA TCCTGGCGAT GACGGCCAAT GCCTCGCAGG CGGATAAACA GGAATGCCTC
GAGGCGGGCA TGAATGCCCA CGTGAGCAAA CCCATAGATA TGCAGCAGTT ATTGCCAAAT
ATTCTGCGGC TGGTGGGGCG TGATGCGGCA CAGTTCGCAG AGCCTGAGTC AATGCATCTT
GACGCTCAGC ATAATCTCGA AGGCGAGACC CTGCTCGACG ATATTCGCTT GATCCTGCGC
CGCTTTGGCG GCAACCAAGT ATTTTTCGAG AAAATGGCGA GCAGTTTTGC CCCTGAAATG
ATCAAACAGC TAAGCTTGTT CAAGCAATCG ACAAAAACCT TTGATTACGC CACCACAGCG
GCGATTAGCC ATGCGATTAA AGGCATTGCC AGCAACTTTG GTGCGAGGCG TTTAGCCGTG
CATGCAGCAT TTTTAGAAAA ACAATTTAAA CAAGAAGGCC TAGAGCTGCT GGAAATAAAA
CGCTGGACGG ATACACTGGA GTCCTTAATT AATCAAAGTA TTGAGCAGCT TTCTGGCTTT
TTACCCAAGA CACAGTTAAA ACAGTCGCAA TCGAGCGAGT CTGCAAACGG TGTTGTGGAT
ATACAAAGTG TTCGAGCCGA GTTGGATAAC TTGGCCTCCC TCTTACAGGA AAATAATTTA
GAAGCCGTGA CTCTTGTAGA TAAACTCGCA AAACCGCTCT CACAGCACCC ACAATGGACT
GAGCTAAATG GACAAGTGCA ATCCCTCGCC TTTATGCAAG CCTTAGAGAC ATTGCGTGCG
ATGATGTTGG AGAATGCCTA G
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| Protein sequence | MTLSMSYKQA SKWGLFVLLV GLFFSAVLAW QVSRINAQTI SQALEERAQQ ISENVTNRIT
LYQYGLRGAR GMILTAGEDH ISRSMFQNYS LTRDVDEEFP GARGFGFIRR VPKENEAQFL
ARVKSMDWPD FHIRQLNPNE GEKYLIEYIE PLDRNKAAVG LDIASESHRK EAADRALLSG
AVQISAPITL VQATGKPLQS FLILLPVYRS GTVPKTPEER LAQGFGWSYA PLVTTEILTG
LSLHQKMTKL MLSDVTDEQQ PINFFETHAN DLSELSDYSY KSTKTIFGRH WQFEVIAYPA
FIKSLHLNKP SLVLFSGCLF SLLLAALIAM WSLSLQRKQQ VLAEQARRAS MLEHSLDGII
SYDLAGNITS WNQGAERLFG FTEPETLGLP SSELIVPPSI VLEEQALFAE VLAGKTVLNR
VSRHQRADGS NLSTSTTALP IYDEHGDIVG LSQTIRDITA QQDAERHILN LNASLERQVA
KRTHALQQAL LENQALLDTI NQQLHYSVTD LDGVILDVNE HFCLISGYAR EELVGKTHAV
LKSGEHDAAF WKAMWEQIKA GKSWHGEICN RGKDQQLKWF DTVIGSVFDE HGQVERFVAL
QTDITERKLA QIEKNRIATL LTNVLDAASE MTIIAADPQG IITIFNRGAE RMLWYSAEEI
IGKTTPAPFH IADEIAARAA ELSVEYGQKI QGFDTFVHKA REEGSETRTW TYVRKDGSQL
PISLSVTAMR GNDGEILGYL GIGVDISQIV AQQEALLTAS NHLSKAAEVA KLGIWTWNLL
DNSLQWNDRM FAMYDQPESL KQQGLSYEHW RMRVHPDDVI EAEETLKRAV EHDEPYEPIF
RILTTDGEVR YVQAAAKIER DRQGHVIRVI GINIDITAQR QLEKTLRNAK QEADTANAAK
SAFLANMSHE IRTPMNAVLG MLQLMQYTAL SVQQQGYVTK AQTAAKSLLG LLNDILDFSK
IDAGKLKLDL HPCSIELLMR DLAVVLSANH GNSDVEVMFD LDSALPAWLL ADQLRLQQIL
INLAGNALKF TPHGQVIVGL ECLRHEAESV TVQFSIVDSG IGISEEQIER IFTGFEQAES
STSRRFGGTG LGLAISKRLV ELMGGQLQVT SKVGVGSRFW FDLTFPVMEV EANPRADLSG
YRILVVDDNQ ITTEILSKIL SDYGCVVETA SGGYQAIEKV KQATANAQQF DVVLMDWRMP
DIDGLQTAEM LKNAGTGSYT PLVVMLTAYG HEVIAESQHI NNVPFVNFLT KPVTSQILAE
AVLNAIEGKT MDANPKPRSQ RLLAGLTLLV VEDNQLNREV IDELLTYEGA TVVLAEGGIE
GVTQVLDSGD MFDAVIMDMQ MPDIDGLEAT RRIRADGRFD QLPILAMTAN ASQADKQECL
EAGMNAHVSK PIDMQQLLPN ILRLVGRDAA QFAEPESMHL DAQHNLEGET LLDDIRLILR
RFGGNQVFFE KMASSFAPEM IKQLSLFKQS TKTFDYATTA AISHAIKGIA SNFGARRLAV
HAAFLEKQFK QEGLELLEIK RWTDTLESLI NQSIEQLSGF LPKTQLKQSQ SSESANGVVD
IQSVRAELDN LASLLQENNL EAVTLVDKLA KPLSQHPQWT ELNGQVQSLA FMQALETLRA
MMLENA
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