| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3900 |
|---|
| Symbol | |
|---|
| ID | 4480111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4678503 |
|---|
| End bp | 4681022 |
|---|
| Gene Length | 2520 bp |
|---|
| Protein Length | 839 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639728513 |
|---|
| Product | 1A family penicillin-binding protein |
|---|
| Protein accession | YP_871524 |
|---|
| Protein GI | 117922332 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.247667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.227457 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGTGGT TAAAACGTAT TGTTATAGCT CTATTCAGTC TAGCCCTTTT GGGCGTGGGC
GCCATTGTTG CAGCATACTT TTATGTTTTG CCGGATCTGC CGGATGTATC GACACTAAAA
AATGTGCAAT TACAAACACC TTTGCGCATT TACAGTAGTG ACGGCAAACT CATCTCTCAA
TTTGGAGAGA AGCGCCGTAT TCCGCTGAAA CTCGAAGAAG TGCCTAAACC ACTGCTGCAA
GCCTTCCTCG CCACCGAAGA TGCACGCTTT TATGAGCACG GCGGCATAGA TCCTGTTGGG
GTGATGCGTG CCGCAATCGT CATGCTCACC ACGGGTGAGA AGAAGCAAGG TGCGAGTACG
ATCACCATGC AGGTGGCGCG TAACTTCTTC CTGACCCGCG ACAAGACCAT TATTCGTAAA
GTGAAGGAAA TTTTTATTTC CTACCACATC GAGCAATTGT TAACTAAAGA TGAGATTTTA
GAGCTCTACG TTAACCGTAT TTATTTAGGT CAGAGAGCCT ATGGTGTCGG CGCAGCCGCT
CAAGTGTATT TCGGTAAAAA CGTTCAAGAT CTGACGCTTT CCGAAATGAG TATGATCGCG
GGCCTGCCTA AAGCACCGTC GACGCTAAAC CCTATCACCT CCCCTTCACG TGCACTCGCT
CGCCGCAACG TGGTATTGAT GCGGATGAAC GAAGTGGGTT ACATCAGCAA GGCTGAATAC
CAAGCAGCTG TGCAAGAGCC ACTCATCGCC AAATACCATG GTGCTGAAAT CGATCTCTAC
GCTCCTTATA TCTCTGAAAT GGCTCGGGAT TATATGGTGC AGAAATACGG TGAAGAAGAA
GCCTACACCA ATGGCTATAA CGTCTACACC ACTATTTCAT CAGAGCAACA ACTGCTAGCA
CAGCAAGCAT TACGCAATAA CGTCTATGCC TATGATGAGC GCCACGGTTA CCGTGGTCCT
GCGGCGGTTC TCTGGACCGA TGCCAAGCCG GATGATGCAC AAATCAAAGC CGAGCTCGCA
AAAATTACGC CTGTGCAAGA GTTGCAACCT GCTGCGGTAT TAAACATCGA TGGTCAGCAA
GCCAGCGTGT TAACCGCCAA GGGCGAGACC AAAATCATTA AGTGGGATGG CCTAAAATGG
GCACGCAAAT TTATCACCGA TAAACGCCAA GGCTCGGTGC CAAAATCGGC CTCGGATATG
CTAAAAGTCG GTGAGCGTAT TTGGATCCGC GATAACGGTC AGTACCTACA ATTATCGCAA
GTGCCTGAAG TGGCCAGCGC CACTGTTGCA CTCGATCCTA CAAATGGTGC TATCCGCACC
TTAGTGGGCG GCTACAGCTT CAGCCAAAGC CAATATAACC GCGTGACCCA AGCGAAACGT
CAATTAGGTT CGAATATTAA ACCTTTCATC TATGCCGCAG CATTAGAGAA AGGCTTTACC
CTCGCGACCC TGATTAACAA CGCGCCGATT AACAAACCCG ATATTAGCCA AGGTACTGCG
TGGCGCCCGA AAAACTCGCC CGATATCTAT GGCGGTCCAA CACGCCTGCG TGTGGGCTTA
GCGCAATCGA TCAACGTAAT GTCGGTTCGC GCCATGCGCC ATATTGGTTT AGATGCGGCC
ATCGCCGAGC TGACTAAGTT TGGCTTCGAT CCTAACGACT TACCTCGTAA CGAGTCGTTA
GCCTTAGGTT CTCCTTCGGT CACCCCGCTG CAAGTGGCAA CCGCTTTCAA CGTGTTCGCA
AACGGCGGCT TCTTGGTGGA ACCTTACTAT ATCGAACGAG TAGAAGACTC CTTCGGTAAT
GTGATTGAGA AGGCCAATCC GACCTTAGCC TGTAAGCCGA ACAACAGCTT TGTGCAGCCT
AGCAGCGATC CAATGAGTTT TGGTGAGCCA ACGACTCAAA CCGATGAACC TGTCGCTCAT
TGCTTCGAGC AAACAGGCCG TTATGCTCCG CAAATTATCT CTGAACAAAC GGCATTCCTG
ATCACCGAAG CGCTGAAGAG TGTGATCTGG GGTGGTGGCG ATTGGAGCAA AGGCACTGGC
TGGCAAGGTA CTGCTTGGCG TGCGGCTCAG TTAATCAAAC GTCATGATAT TGCAGGTAAA
ACGGGTACAA CCAACGAATC ACGCGATACT TGGTTCAGTG GTTTTGGCCC GACACTGACC
AGCACATTCT GGGTAGGCTT TGACGACCAT GGTCGCCAGT TAGGCAGAAC CGCATGGAAC
TCCAACGGCG AGAAGGATCA GATCACGGGT ACCGAGGCTG GCGCGAAGAC CGCAGGCCCT
GGCTGGAACG AGTTTATGAA TAACGTGCTG AAAGGCGTAC CTGAAACCAC AGCAATTCCG
CCAGAAGGGA TTGTCTCGGT GCGGATCGAT TTGGCGACCG GCAAGCTAAC TCGTAAGACA
GATTACACCA GCGCATTTGA GTACTTTATC TCGGGCACTG AACCTAAAGA ATACATCAGT
GAAAGCCAAG ATGAAAACAA CCTATTCATC GATGCGCCGA CAGACGATTT ATTCCAATAA
|
|---|
| Protein sequence | MKWLKRIVIA LFSLALLGVG AIVAAYFYVL PDLPDVSTLK NVQLQTPLRI YSSDGKLISQ
FGEKRRIPLK LEEVPKPLLQ AFLATEDARF YEHGGIDPVG VMRAAIVMLT TGEKKQGAST
ITMQVARNFF LTRDKTIIRK VKEIFISYHI EQLLTKDEIL ELYVNRIYLG QRAYGVGAAA
QVYFGKNVQD LTLSEMSMIA GLPKAPSTLN PITSPSRALA RRNVVLMRMN EVGYISKAEY
QAAVQEPLIA KYHGAEIDLY APYISEMARD YMVQKYGEEE AYTNGYNVYT TISSEQQLLA
QQALRNNVYA YDERHGYRGP AAVLWTDAKP DDAQIKAELA KITPVQELQP AAVLNIDGQQ
ASVLTAKGET KIIKWDGLKW ARKFITDKRQ GSVPKSASDM LKVGERIWIR DNGQYLQLSQ
VPEVASATVA LDPTNGAIRT LVGGYSFSQS QYNRVTQAKR QLGSNIKPFI YAAALEKGFT
LATLINNAPI NKPDISQGTA WRPKNSPDIY GGPTRLRVGL AQSINVMSVR AMRHIGLDAA
IAELTKFGFD PNDLPRNESL ALGSPSVTPL QVATAFNVFA NGGFLVEPYY IERVEDSFGN
VIEKANPTLA CKPNNSFVQP SSDPMSFGEP TTQTDEPVAH CFEQTGRYAP QIISEQTAFL
ITEALKSVIW GGGDWSKGTG WQGTAWRAAQ LIKRHDIAGK TGTTNESRDT WFSGFGPTLT
STFWVGFDDH GRQLGRTAWN SNGEKDQITG TEAGAKTAGP GWNEFMNNVL KGVPETTAIP
PEGIVSVRID LATGKLTRKT DYTSAFEYFI SGTEPKEYIS ESQDENNLFI DAPTDDLFQ
|
|---|
| |