Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_3851 |
Symbol | |
ID | 4480061 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 4624559 |
End bp | 4625701 |
Gene Length | 1143 bp |
Protein Length | 380 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 639728464 |
Product | diguanylate cyclase |
Protein accession | YP_871475 |
Protein GI | 117922283 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.344739 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGATAA ATAGTGACAA TTCAACTTTA TTAACATTTA TTGAAATCAT AAAATTTGAG GCAAGTGAAA AATATTTGAT AAAAAAATAT TTTGATTATC GTATTTGTAC TACAGCGATA CTGTTATTAC TAATACCCTT AGGATTTGCA GAAGGCTTAT TTGACCATAT AACCACACCT GAATTGAATG GTGAGCTACT AGAACTTAGA TTATATATGT TTTTTTTGAT TATCCCTGCG ATTTTAACAT TTAAGGCAAA GAGTGTTAAA ATCGCAACAG CAACTATTAT TGTGACTGTG ATCTTCATAT CTTTTCTTTC AATAAAAATG GCTGAGATTT TAGGTGAAGA GGCTATTTAT ACAGTTACTA CCGTGGCTAT TTACCCTTTC CTTATATTCT TCATTTTAAT TGGACTTTCA ATATACATCC AAATTACTGC CCTATTTTCT GCTTTTTTGT TTGTTATACA TTACAAGTTA GATGCAGCTA CGAATATGGA TCTGCAAAAC ATTTATTTCC AAATAGCATT TCTTTATAGT CTTGCCGCAT TGTTAGTAAT GCTAATTTTC TCTTGGAGTT ATTACAATCG TTATTGCCTT GAACTGGCTC TAGAAAAGGG GTCAAGAACT GATCCATTAA CAGGTGTAGC TAATCGAAGA CATTTTGATA GTTTGCTTAA ATCCGAGGTG AATCGAAACT CTAGATTTGG AAGCGCTTGT GCTCTCATTA TACTAGATAT AGATTTTTTT AAGCGCATTA ATGATACATA CGGACACCCA ACTGGAGATA GTGTTATTTG TTCCCTTGCG AATTTCTGCG TAACCCTCTC CCGGGAAACA GATCTGGTGG CTCGACTAGG TGGAGAAGAA TTTGCAATAA TTCTCCCCGA TACAAACATT AGTAGTGCAA AGAATCTAGG AGAACGAATC AGGTTACATG TTGAGAACCA ATCTTTAATA AGTGAAACAG GAGAGAAAGT AATATGGACA ATTAGCTTGG GGATCTCCGC CTTACAAGAA CACAAAATTA CTAAAAATAA TAATGAGTTT ATTGCTGAGC AATTAATTCA GCATGCAGAT ACAGCTCTTT ACGAGGCTAA AAAAGGCGGA CGTAATAGAA CTGTTTTATA TGACAGTGAA TAA
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Protein sequence | MMINSDNSTL LTFIEIIKFE ASEKYLIKKY FDYRICTTAI LLLLIPLGFA EGLFDHITTP ELNGELLELR LYMFFLIIPA ILTFKAKSVK IATATIIVTV IFISFLSIKM AEILGEEAIY TVTTVAIYPF LIFFILIGLS IYIQITALFS AFLFVIHYKL DAATNMDLQN IYFQIAFLYS LAALLVMLIF SWSYYNRYCL ELALEKGSRT DPLTGVANRR HFDSLLKSEV NRNSRFGSAC ALIILDIDFF KRINDTYGHP TGDSVICSLA NFCVTLSRET DLVARLGGEE FAIILPDTNI SSAKNLGERI RLHVENQSLI SETGEKVIWT ISLGISALQE HKITKNNNEF IAEQLIQHAD TALYEAKKGG RNRTVLYDSE
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