| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3649 |
|---|
| Symbol | |
|---|
| ID | 4476248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4384465 |
|---|
| End bp | 4388211 |
|---|
| Gene Length | 3747 bp |
|---|
| Protein Length | 1248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639728255 |
|---|
| Product | MSHA biogenesis protein MshQ |
|---|
| Protein accession | YP_871275 |
|---|
| Protein GI | 117922083 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.516469 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAAAT TTCGATTAAT CCTTTCACTC TTAATCATCG TATGCTCATC CCCTTTGGCA
AAAGCTGATT GGAGTAAAAC CTTTATTGAA GGTGTTAATA ATTACGATAG AAATGGTTCA
ATTACCTTTA ATAGCTCTTA TTTATATAAT GCACCCAATA ATGCACTTAT CTGGTATAGC
TATTTGCCAA CTTATAATTT TATTCAAAAG GGGAATAGCT TAGCAACACT ATGTGTTACG
TCTAATAATT CATATCGTTG GTGTCAAGAT GGAGATTATA TTGCCAGTTT ACCTTCTAAT
CGTATTGATT TTTCTCAGTG TACTTCTTCA GGCACAGTCA ACATTGGTCC CCCCACGTGG
GATAATAAGC AAATTAATGT AATTGAAGGT GAATACAATA ATATTGTTCT TGATGGAGGT
TCAGATAAGA CAATCCGGTT TGTTAGCAAT AATGGCGTGT ATAAGATGAA ATCGCTTAAG
GCTACCTCAG GCCGTATTGA GCTTGCTGCA GGGCAATATT GGATTGAAAC TTTATCTATT
AATGACGGTG TAACTCTGGT CTTTCCATCA ACTGGTACTG TGTCATTTTT TATTAAGAAT
AACTATAGAC ATTACAACTT AAACACCATT GGCCAGGCTG AAAAATTTCT CATTTATAGC
TATTCAAATT TCACTCTCAA TGGAGAGGCA TCTCTTAAAT CTTATGTTGT AGCAGAAGGG
AATGCGGTGC TAGACGGTAG TTCTTATTTG GAAGGAGCTA TTACTGCAAG AAATATAAGT
TTAGGTGGCA ACAGTAGTAT TAAATTTGAT GATAATGCTG CAAAGATTGA TGTTGTTCCA
AATTGTAATC CTGCGCCCGT TTTACAGTGC TTTAACGATA ACTTCTCCCT GAGTGCCTTA
AGTAACGACT GGGTAGTCTC TCGTAGTAGC GGTACTTTTA CTCCTGCCAT TGTCAGTGGT
CGTATGCGCT TAACCGAGGC AAAATCCAAT CAATCCACGG CCTCGACCTA TCAAAGATTA
TTCCCCGCAG CGAATAACTT AGTCGAGATC CAATTCGATC ACTATGCCTA TGGTGGCAAT
GGTGCTGACG GTATCGCGCT TGTGTTATCA GATGCTGCCA TCACGCCACA GCCCGGCGCC
TTTGGTGGGC CTTTAGGCTA TGGCTATAAA CCCGGTATTA GCGGTTTTGC TGGCGGTTGG
TTAGGTATCG GGATCGATGA ATTTGGTAAC TTCTCCGGGG AAGGTGGAAG GGTTAATCTT
TCAGGGCAAC GTCGTCAGTC GGTTGTTGTA CGTGGCTCAG GGGCAGGCAC ATCAGGGTAT
AATTATTTGC GGGGCACCTG TAATGACGGC AAAAGTAATA CCAGTGGCAA CTGTTTATCA
CCCACGGTCG ATGGCAATAA TGTCTCGCCT GCGCACCGCT ATAAAATCAC TATCGACTCG
CAGGTATCCG GTAAGTCGAT AGTGAAGGTT GAGCGTAATA CGGGTTCTGG ATTTGTCACC
TTAATCCCTG CCTTTGATGC CATCGATGAA CAAGGGCAAG CGGCGATACC CACTGACTTC
TTGTTGTCGC TTACAGGCTC AACCGGTGGC TCGAATAACA ATCATGAAAT TGATAATGTT
CAAATTTGTG CCTTAAAGTC GAATCCGATT GGCGCGCAAA TCGATCATTT TGAGTTTGAC
CATACGGGGC AGGGATTGAC CTGTAACCCC GAAACTGTGA CGATTCGAGC CTGCGCCAAC
GCCAGTTGTA GTCAGCTTTT TACCGATCCT TTAGCGGCGA CCTTGTTACC CGAATCCGCC
TCCGAAGGCA TATGGATTGG CGGCAAGCAG GTGAGCTTTA GCAATGGCAG CACTCAGTTG
CAGCTAAGAC GTAACACCCC TGGCGTTGTG ACCTTGGGTG TGAAGGGTTC GAGCCCGACA
ACCAAACCTT TAAGTAAAAC CCTATGCCGT ATCGGGAATG GGGGCATGAG TGAGAATAAC
TGTTCACTTA CTTTCGCCGA CAGTGGTTTT GTCTTCGATG TGCCTGATAA ATTGGCTAAT
AAGCCCGTTG AGGTGCTAGT CAAAGCGGTG AAAAAATCCG ATGTGACAAA GCAGTGTGTT
CCAAGCTTTC AGGACCAGAC CAAGATATTG AATTTCTGGA GTCAGTATGT GGAGCCAAGT
GCGCCAATCA CACCTAAGGC TGTCACTGTT AATAACACAG CAATCAGTAC TGCTAGCGCC
ACACCTACTG TATTGAGCCT AGGCTTTGAT GTTAATGGGC AGGCAAAAGT GTCGGTCAAT
TACCCCGATG CAGGCAAATT ACAACTTGAC GCCCAATATA TCGGCAGTGG CAACGAGCAA
GGACTGGTGA TGACAGGCTC GGACCAATTT GTCAGTGTGC CTGCGGGTTT GTGCGTCAAA
CCCGTGGACG CCAGCGCCAG TTGCTCGAGT GCGGATATGA GCTGTAATGC CTACCGTAAA
GCGGGGCAGA ATTTCGGTAT GACGGTCCAA GCTATGGCCT GGGAAAAGGA CGGCGATACG
GACTTTTGTT CGGGTAACGT ATCTACGCCT AACTTTAGCG ACCAAGCCAT GACACTAACC
AGTAAGGTCG TGGCGCCAAA CATGGCTAGC GGCGGCCATG ATGGCGCATT AGGTGTGGCA
TCCTATAGTC ATACTATCCA AGCCAATAAC CTTAATAGCA TCACGAATCA GACGATTAGC
GAAGTGGGGG TATTTCAAAT CGCGGCGCAG GCGAGCCCTA ATTATCTCGG GGCGGCCAGC
AGCTTAAATA TTCCGATTGG CTATTCAGCC AATATTGGCC GTTTTGTACC CGATAGATTC
TTAGTGGGCG ATATTTCCGT CTTACCCGCC TGCGGCAGTT TCAGCTATAT GGATCAACCC
TTTCCGATGT CGATGAGCCT CACAGCCTTA AATATCGGCG GCGCGGTGAC GCAAAACTAT
TTCCCACCAT TCTCCCTCGC GACCGCGAAA TTGGTGGGCG AAAACAATAA CAATGGTATC
GACTTGCAGA GTCGCTTAAG TGCCTTGCCC GTCAACGCGG CGAGTTGGGT TCAAGGTGTG
GCGACGGTCG ATGGCGCTTA CCGCGCTAAC TTGAGCCGAG TAACCCCGAA TGTGGCGACG
AATCTGTATC AAGACGGTCC CTTCGAGCTG CTCGATATTG GTGTGCAGTT GATGGATAAC
GATCCTCGTC CAAATGGACT TTTTAGCTAT GTGGCATCGC CTGATATGGA TGCGGCAACC
ACGGGTAATT GCACTAATTG CAATGCCAAG AAAATCACCA CGCAGATCCT ACGCCATGGT
CGGGTGGTGA TGGACAACAC CTATGGTCCA GAGACTGAAA TCCTCAGGAT GCCGACCCGA
GCCGAATATT CGAATGGGGC TAATTGGGTA TTAAATGGCG ATGATAGCTG TACGATTGCT
ACCTACGGCC TTGCGTCGCA GGTGGATAAT GCAGCCTTAG GCTATAACTT TGACCCGGAT
TTGACCACAG GGCAGAGCAT TAATCGCTCG GGCGCTTCAT CGGCTTTTCA AGCGGGACAA
TTTGATTTGC TGTGGCGAGC GCTCACCTCG AGTGGCAATT TATATCGCGG CCAAGTGACC
GCGCCTTTAG ATGTACCGAC CTGGTTAGAA TGGTATTGGA ACTGGAATGG GGTCTCCCCA
ACCAGCTTAT CCGATCCCCG TGCGAGTGCA TTTTTTGGTC GTTACCGTGG CCATGACAGA
ATCATCTACT GGCGAGAAGT CAATTAA
|
|---|
| Protein sequence | MVKFRLILSL LIIVCSSPLA KADWSKTFIE GVNNYDRNGS ITFNSSYLYN APNNALIWYS
YLPTYNFIQK GNSLATLCVT SNNSYRWCQD GDYIASLPSN RIDFSQCTSS GTVNIGPPTW
DNKQINVIEG EYNNIVLDGG SDKTIRFVSN NGVYKMKSLK ATSGRIELAA GQYWIETLSI
NDGVTLVFPS TGTVSFFIKN NYRHYNLNTI GQAEKFLIYS YSNFTLNGEA SLKSYVVAEG
NAVLDGSSYL EGAITARNIS LGGNSSIKFD DNAAKIDVVP NCNPAPVLQC FNDNFSLSAL
SNDWVVSRSS GTFTPAIVSG RMRLTEAKSN QSTASTYQRL FPAANNLVEI QFDHYAYGGN
GADGIALVLS DAAITPQPGA FGGPLGYGYK PGISGFAGGW LGIGIDEFGN FSGEGGRVNL
SGQRRQSVVV RGSGAGTSGY NYLRGTCNDG KSNTSGNCLS PTVDGNNVSP AHRYKITIDS
QVSGKSIVKV ERNTGSGFVT LIPAFDAIDE QGQAAIPTDF LLSLTGSTGG SNNNHEIDNV
QICALKSNPI GAQIDHFEFD HTGQGLTCNP ETVTIRACAN ASCSQLFTDP LAATLLPESA
SEGIWIGGKQ VSFSNGSTQL QLRRNTPGVV TLGVKGSSPT TKPLSKTLCR IGNGGMSENN
CSLTFADSGF VFDVPDKLAN KPVEVLVKAV KKSDVTKQCV PSFQDQTKIL NFWSQYVEPS
APITPKAVTV NNTAISTASA TPTVLSLGFD VNGQAKVSVN YPDAGKLQLD AQYIGSGNEQ
GLVMTGSDQF VSVPAGLCVK PVDASASCSS ADMSCNAYRK AGQNFGMTVQ AMAWEKDGDT
DFCSGNVSTP NFSDQAMTLT SKVVAPNMAS GGHDGALGVA SYSHTIQANN LNSITNQTIS
EVGVFQIAAQ ASPNYLGAAS SLNIPIGYSA NIGRFVPDRF LVGDISVLPA CGSFSYMDQP
FPMSMSLTAL NIGGAVTQNY FPPFSLATAK LVGENNNNGI DLQSRLSALP VNAASWVQGV
ATVDGAYRAN LSRVTPNVAT NLYQDGPFEL LDIGVQLMDN DPRPNGLFSY VASPDMDAAT
TGNCTNCNAK KITTQILRHG RVVMDNTYGP ETEILRMPTR AEYSNGANWV LNGDDSCTIA
TYGLASQVDN AALGYNFDPD LTTGQSINRS GASSAFQAGQ FDLLWRALTS SGNLYRGQVT
APLDVPTWLE WYWNWNGVSP TSLSDPRASA FFGRYRGHDR IIYWREVN
|
|---|
| |